| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,509,643 – 9,509,739 |
| Length | 96 |
| Max. P | 0.954190 |
| Location | 9,509,643 – 9,509,739 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Shannon entropy | 0.31987 |
| G+C content | 0.44318 |
| Mean single sequence MFE | -28.64 |
| Consensus MFE | -18.10 |
| Energy contribution | -19.53 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9509643 96 - 27905053 UAUAUCUUCCCGGAUAAUUGUAAUUUUCGCUAUUUUCCGCGGAC-CGACGCUAGAGCGUUGGUCUGACC--AC---GACGAUAA-UAUCUGCGUAUCGAUACU ..((((.((.((((.(((.((.......)).))).))))(((((-((((((....)))))))))))...--..---)).)))).-((((........)))).. ( -28.70, z-score = -2.45, R) >droEre2.scaffold_4770 5620818 96 + 17746568 UAUAUCUUCCCGGAUAAUUGUGAUUUUUGCUAUUUUCCGCGGAC-CGACGCUAGAGCGUUGGUCUGACC--AC---GACGAUAA-UAUCUGAGUAUCGAUACU ..((((.((.((((.(((.(..(...)..).))).))))(((((-((((((....)))))))))))...--..---)).)))).-((((........)))).. ( -29.50, z-score = -3.03, R) >droYak2.chr3R 13818037 96 - 28832112 UAUAUCUUCCCGGAUAAUUGUGAUUUUUGCUAUUUUCCGCGGAC-CGACGCUAGAGCGUUGGUCUGACC--AC---GACGAUAA-UAUCUGAGUAUCGAUACU ..((((.((.((((.(((.(..(...)..).))).))))(((((-((((((....)))))))))))...--..---)).)))).-((((........)))).. ( -29.50, z-score = -3.03, R) >droSec1.super_0 8623168 96 + 21120651 UAUAUCUUCCCGGAUAAUUGUGAUUUUCGCUAUUUUCCGCGGAC-CGACGCUAGAGCGUUGGUCUGACC--AC---GACGAUAA-UAUCUGCGUAUCGAUACU ..((((.((.((((.(((.(((.....))).))).))))(((((-((((((....)))))))))))...--..---)).)))).-((((........)))).. ( -32.20, z-score = -3.36, R) >droSim1.chr3R 15591355 96 + 27517382 UAUAUCUUCCCGGAUAAUUGUGAUUUUCGCUAUUUUCCGCGGAC-CGACGCUAGAGCGUUGGUCUGACC--AC---GACGAUAA-UAUCUGCGUAUCGAUACU ..((((.((.((((.(((.(((.....))).))).))))(((((-((((((....)))))))))))...--..---)).)))).-((((........)))).. ( -32.20, z-score = -3.36, R) >dp4.chr2 10061164 94 - 30794189 UUUAUCUU-UCGGAUAAUUAUGAUUUUA-CAAUUUUCCGCGGAA-CGACGCUCGAGCGUUGA-CUGACCCGACC---ACGACAAAUUUGUGGGGGGGAAUA-- ....(((.-.((((.((((.((....))-.)))).)))).))).-((((((....)))))).-....(((..((---((((.....))))))..)))....-- ( -28.00, z-score = -2.48, R) >droWil1.scaffold_181130 10957898 101 - 16660200 UUUAUCUU-UCGGAUAACUUAUUUUCUU-UAAUUUUCCGCGGAACCGACGCUCGAGCGCUGGUCUGGCCUAACCGAGACGAUAAUUUUUUGUGUGUUGUUGUU .(((((((-((((.....(((.......-)))......((.(.((((.(((....))).)))).).))....)))))).)))))................... ( -20.40, z-score = 0.24, R) >consensus UAUAUCUUCCCGGAUAAUUGUGAUUUUCGCUAUUUUCCGCGGAC_CGACGCUAGAGCGUUGGUCUGACC__AC___GACGAUAA_UAUCUGCGUAUCGAUACU ..((((....((((.(((.((.......)).))).))))(((((.((((((....))))))))))).............)))).................... (-18.10 = -19.53 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:50 2011