| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,500,295 – 9,500,414 |
| Length | 119 |
| Max. P | 0.723662 |
| Location | 9,500,295 – 9,500,414 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.72 |
| Shannon entropy | 0.10997 |
| G+C content | 0.46891 |
| Mean single sequence MFE | -32.58 |
| Consensus MFE | -27.43 |
| Energy contribution | -27.47 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9500295 119 + 27905053 ACGCUGCGUGUUGCUUAAAUAGAUUUUCGGGCGAAAGCUCGUCCUGCCAAAUUCGCUCUCUUCGCGGAAAAUC-UCUCUCACUGUUAAGCUAACAUGUGUCCUAACCGGUUAAGCGAAUU .(((((((((((((((((..((((((((((((....)))).............(((.......))))))))))-).........)))))).)))))))..((.....))...)))).... ( -36.20, z-score = -3.12, R) >droEre2.scaffold_4770 5611336 119 - 17746568 ACGCUGCGUGUUGCUUAAAUAGAUUUUCUGGCGAAAGCUCGUCCUGCCAAAUUCGCUCUCUUCGCGGAAAAUC-ACUCUCGCUGUUAAGAUAACAUGCGUCGUAACCGGUUAAGCUAGUU (((.(((((((((((((....(((((((((.(((((((................)))...)))))))))))))-((.......)))))).))))))))).)))(((..(.....)..))) ( -30.49, z-score = -0.65, R) >droYak2.chr3R 13808601 118 + 28832112 GCGCUGCGUGUUGCUUAAAUAGAUUUUCGGGCGAAAGCUCGUCCUGCCAAAU-CUCUCUCCUCGCGGAAAAUC-UCUCUCGCUGUUAAGUUAACAUGCGCUCUAACCGGUUAAGCUAAUU .....(((((((((((((..((((((.(((((....))))).......))))-))........(((((.....-..)).)))..))))).))))))))(((.(((....))))))..... ( -30.80, z-score = -1.36, R) >droSec1.super_0 8613898 119 - 21120651 ACGCUGCGUGUUGCUUAAAUAGAUUUUCGGGCGAAAGCUCGUCCUGCCAAAUUCUCUCUCUUCGCGGAAAAUC-UCUCUCGCUGUUAAGCUAACAUGUGUCCUAACCGGUUAAGCGAAUG .(((((((((((((((((..((((((((((((....)))))..((((................))))))))))-).........)))))).)))))))..((.....))...)))).... ( -32.69, z-score = -2.20, R) >droSim1.chr3R 15582120 120 - 27517382 ACGCUGCGUGUUGCUUAAAUAGAUUUUCGGGCGAAAGCUCGUCCUGCCAAAUUCUCUCUCUUCGCGGAAAAUCCUCUCUCGCUGUUAAGCUAACAUGUGUCCUAACCGGUUAAGCGAAUG .(((((((((((((((((.........(((((....)))))......................(((((........)).)))..)))))).)))))))..((.....))...)))).... ( -32.70, z-score = -2.18, R) >consensus ACGCUGCGUGUUGCUUAAAUAGAUUUUCGGGCGAAAGCUCGUCCUGCCAAAUUCUCUCUCUUCGCGGAAAAUC_UCUCUCGCUGUUAAGCUAACAUGUGUCCUAACCGGUUAAGCGAAUU ..((((((((((((((((.(((.....(((((....)))))..((((................))))..............))))))))).)))))))....(((....))))))..... (-27.43 = -27.47 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:47 2011