| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,470,093 – 9,470,187 |
| Length | 94 |
| Max. P | 0.542555 |
| Location | 9,470,093 – 9,470,187 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 94.03 |
| Shannon entropy | 0.10011 |
| G+C content | 0.53593 |
| Mean single sequence MFE | -29.36 |
| Consensus MFE | -28.00 |
| Energy contribution | -27.96 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9470093 94 + 27905053 AUCGGCGGAGCGGAGACUUUUGGAGACUGGAGUGUGGAGAGGGUUGCAUAUCCUCCAAGUAUAAGUCCGCCGAAUCCGAAUCCGAAUCCGUAAC ....(((((..(....).((((((...((((..(((((((((((.....))))))..........)))))....))))..)))))))))))... ( -30.10, z-score = -0.87, R) >droSim1.chr3R 15551041 88 - 27517382 AUCGGCGGAGCGGAGACUUUUGGAGACUGGAGUGUGGAGAGGGUUGCGUAUCCUCCAAGUAUAAGUCCGCCGGAUCCGAAUCCGUAAA------ ....((((((((((.((((..(....)..))))...(.((((((.....))))))).........)))))((....))..)))))...------ ( -29.60, z-score = -0.81, R) >droSec1.super_0 8583521 88 - 21120651 AUCGGCGGAGCGGAGACUUUUGGAGACUGGAGUGUGGAGAGGGUUGCGUAUCCUCCAAGUAUAAGUCCGCCGGAUCCGAAUCCGUAAA------ ....((((((((((.((((..(....)..))))...(.((((((.....))))))).........)))))((....))..)))))...------ ( -29.60, z-score = -0.81, R) >droYak2.chr3R 13778801 88 + 28832112 AUCGGCGGAGCGGAGACUUUUGGAGACUGGAGUGUGGAGAGGGUUGCAUAUCCUCCAAGUAUAAGUCCGCCGAAUCCGAAUCCGUAAC------ ....(((((.((((.((((..(....)..))))(((((((((((.....))))))..........)))))....))))..)))))...------ ( -29.50, z-score = -1.35, R) >droEre2.scaffold_4770 5581061 88 - 17746568 AUCGGCGGAGCGGAGACUUUUGGAGACUGGAGUGUGGAGAAGGUUGCAUAUCCUCCAAGUAUAAGUCCGCCGAAUCCGAAUCCGUAAC------ .((((((((..(....).(((((((...((.(((..(......)..))).)))))))))......))))))))...............------ ( -28.00, z-score = -1.27, R) >consensus AUCGGCGGAGCGGAGACUUUUGGAGACUGGAGUGUGGAGAGGGUUGCAUAUCCUCCAAGUAUAAGUCCGCCGAAUCCGAAUCCGUAAC______ .((((((((....(.((((..(....)..)))).).(.((((((.....))))))).........))))))))..................... (-28.00 = -27.96 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:41 2011