| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,443,266 – 9,443,386 |
| Length | 120 |
| Max. P | 0.957370 |
| Location | 9,443,266 – 9,443,386 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.67 |
| Shannon entropy | 0.04211 |
| G+C content | 0.37833 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -26.59 |
| Energy contribution | -26.99 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9443266 120 - 27905053 UUAAUUUAUGCUCAGUUACUGCAAUAACAAAGUCAACUAAGAAGCCCAAACACCACAAUUAGUUGACGGCAUGCCAUUGUAAAUUAUUAAGGAUUCCCAACAUGCGGUGCAUGCAAAUAG ........(((...((.((((((...((((.(((((((((..................)))))))))((....)).))))..........((....))....))))))))..)))..... ( -26.27, z-score = -1.71, R) >droSim1.chr3R 15523593 120 + 27517382 UUAAUUUAUGCUCAAUUACUGCAAUUACAAAGUCAACUAAGAAGCCCAAACACCACAAUUAGUUGACGGCAUGCCAUUGUGAAUUAUUAAGGAUUCCCAACAUGCGGCGCAUGCAAAUAG ........(((.......(((((.((((((.(((((((((..................)))))))))((....)).))))))........((....))....))))).....)))..... ( -25.37, z-score = -1.42, R) >droSec1.super_0 8556685 120 + 21120651 UUAAUUUAUGCUCAAUUACUGCAAUUACAAAGUCAACUAAGAAUCCCAAACACCACAAUUAGUUGACGGCAUGCCAUUGUGAAUUAUUAAGGAUUCCCAACAUGCGGUGCAUGCAAAUAG ........(((.....(((((((.((((((.(((((((((..................)))))))))((....)).))))))........((....))....)))))))...)))..... ( -28.27, z-score = -2.56, R) >droYak2.chr3R 13752365 120 - 28832112 UUAAUUUAUGCUCAAUUACUGCAAUUACAAAGUCAACUAAGAAGCCCAAACACCACAAUUAGUUGACGGCAUGCCAUUGUGAAUUAUUAAGGAUUCCCAACAUGCGGUGCAUGCAAAUAG ........(((.....(((((((.((((((.(((((((((..................)))))))))((....)).))))))........((....))....)))))))...)))..... ( -28.27, z-score = -2.23, R) >droEre2.scaffold_4770 5554674 120 + 17746568 UUAAUUUAUGCUCAAUUACUGCAAUUACAAAGUCAACUAAGAAGCCCAAACACCGCAAUUAGUUGACGGCAUGCCAUUGUGAAUUAUUAAGGAUUCCCCACAUGCGGUGCAUGCAAAUAG ........(((.....(((((((.((((((.(((((((((...((.........))..)))))))))((....)).))))))........((.....))...)))))))...)))..... ( -30.30, z-score = -2.50, R) >consensus UUAAUUUAUGCUCAAUUACUGCAAUUACAAAGUCAACUAAGAAGCCCAAACACCACAAUUAGUUGACGGCAUGCCAUUGUGAAUUAUUAAGGAUUCCCAACAUGCGGUGCAUGCAAAUAG ........(((.....(((((((.((((((.(((((((((..................)))))))))((....)).))))))........((....))....)))))))...)))..... (-26.59 = -26.99 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:38 2011