| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,427,041 – 9,427,123 |
| Length | 82 |
| Max. P | 0.720785 |
| Location | 9,427,041 – 9,427,123 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 71.61 |
| Shannon entropy | 0.52659 |
| G+C content | 0.41526 |
| Mean single sequence MFE | -18.23 |
| Consensus MFE | -8.08 |
| Energy contribution | -7.75 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9427041 82 - 27905053 AUUUUUCUCUGGCCAAAACUAGCA-ACAUCGCACCGUGGU--UUUGGCCACUUUAAAUCAUUAACCGUUUAGAACAUCUAGAAAG ...(((((.((((((((((((((.-.....))....))))--)))))))).(((((((........)))))))......))))). ( -21.00, z-score = -3.89, R) >droSim1.chr3R 15506639 82 + 27517382 AUUUUUCUCUGGCCAAAACUAGCA-ACAUCGCGCCGUGGU--UUGGGCCACUUUAAAUCAUUAACCGUUUAGAAGAACUGGAAAG ...(((((.(((((.((((((((.-.......))..))))--)).))))).(((((((........)))))))......))))). ( -17.50, z-score = -0.54, R) >droSec1.super_0 8540526 82 + 21120651 AUUUUUCUCUGGCCAAAACUAGCA-ACAUCGCACCGUGGU--UUUGGCCACUUUAAAUCAUUAACCGUUUAGAAGAACUGGAAAG ...(((((.((((((((((((((.-.....))....))))--)))))))).(((((((........)))))))......))))). ( -21.00, z-score = -2.66, R) >droYak2.chr3R 13735917 77 - 28832112 -----ACUCUGGCUAAAACUAGCA-UCAACGCACCGUGGU--UUUAGCCACUUUAAGUCAUAUACCCUGUACCACAUCUGGAAAG -----....((((((((((((((.-.....))....))))--)))))))).....................(((....))).... ( -17.30, z-score = -1.95, R) >droEre2.scaffold_4770 5536441 81 + 17746568 AUUUUUCUCUGCCCAAAACUAGCA-UCAACGCACCGUGGU--UUUAGCCACUUUAAGUCAAAUAGCCU-UAGAACAUCUGGAAAG ............(((......((.-.....))...(((((--....)))))((((((.(.....).))-)))).....))).... ( -12.30, z-score = -0.27, R) >droAna3.scaffold_13340 1976951 78 - 23697760 ----UUCUUAGGCUUUGGCCCCCACGCUGUGCACUGUGGUAAUGGGGCUAAAAGGGCUGAUUAAUGAU-UAAAAACUUUAAAA-- ----...((((.((((((((((...((..(.....)..))...))))))))..)).))))........-..............-- ( -20.30, z-score = -0.57, R) >consensus AUUUUUCUCUGGCCAAAACUAGCA_ACAUCGCACCGUGGU__UUUGGCCACUUUAAAUCAUUAACCGUUUAGAACAUCUGGAAAG .........((((((((((((((.......))....))))..))))))))................................... ( -8.08 = -7.75 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:36 2011