| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,425,150 – 9,425,220 |
| Length | 70 |
| Max. P | 0.547153 |
| Location | 9,425,150 – 9,425,220 |
|---|---|
| Length | 70 |
| Sequences | 4 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.41818 |
| G+C content | 0.40180 |
| Mean single sequence MFE | -13.70 |
| Consensus MFE | -8.55 |
| Energy contribution | -10.30 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9425150 70 + 27905053 AGAAUGUAGAAAAUGCUGGCGACAGUGUUGUCCCAAAAAAA---GGUGUGUUAAUGGGAAUCAAUCAGAUCGG .((.((.....(((((((....))))))).(((((......---..........)))))..)).))....... ( -13.19, z-score = -0.69, R) >droSim1.chr3R 15503167 72 - 27517382 -AAUAGUAGAAAAUGCUGGCGACAGUGUUGUCAAAAAAAAACAAGAUGGGUUAAUGGGAAUCAAUCAGACCUG -.......((.(((((((....))))))).))...............(((((..(((.......)))))))). ( -13.70, z-score = -1.37, R) >droSec1.super_0 8538697 67 - 21120651 -AAUAGUGGAAAAUGCUGGCGACAGUGUUGUC--AAAAAAA---GCUGGGUUAAUGGGAAUCCAUCAGAUCAG -.......((.(((((((....))))))).))--.......---.(((..((.((((....)))).))..))) ( -14.90, z-score = -1.45, R) >droYak2.chr3R 13733935 60 + 28832112 -AAUAAUGGAAAAUGAUGGCGACAGUGUUGCC------------GACUGUUUCCCAAAAAUCAAUCAGAUCUG -......(((((....(((((((...))))))------------)....)))))................... ( -13.00, z-score = -1.55, R) >consensus _AAUAGUAGAAAAUGCUGGCGACAGUGUUGUC__AAAAAAA___GAUGGGUUAAUGGGAAUCAAUCAGAUCUG ........((.(((((((....))))))).))............((((((((......))))))))....... ( -8.55 = -10.30 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:35 2011