| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,421,175 – 9,421,268 |
| Length | 93 |
| Max. P | 0.560259 |
| Location | 9,421,175 – 9,421,268 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 69.82 |
| Shannon entropy | 0.55229 |
| G+C content | 0.46666 |
| Mean single sequence MFE | -22.00 |
| Consensus MFE | -14.00 |
| Energy contribution | -12.44 |
| Covariance contribution | -1.56 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.53 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9421175 93 - 27905053 CGCAGAAUUCAAUGAACACAAUGGGUUCAUUGCUUGAGGGUUUAAC-UGGCUCACAUUUGCACUUCUUCCGGGCAACUUGAGGCAUGGCACGUC .(((((...((((((((.......))))))))..((.(((((....-.))))).)))))))....((((.((....)).))))........... ( -22.80, z-score = -0.39, R) >droSim1.chr2R 4625087 92 - 19596830 CGCA-AAUUCAAUGAACACAAUGGGUUCAUUGCUUGAGGGUUUAAC-UGGCUCACAUUUGCACUUCUUCCGGGCAACUUGAGGCAUGGCACGUC .(((-(((.((((((((.......)))))))).....(((((....-.)))))..))))))....((((.((....)).))))........... ( -23.00, z-score = -0.80, R) >droSec1.super_0 8534644 93 + 21120651 CGCAGAAUUCAAUGAACACAAUGGGUUCAUUGCUUAAGGGUUUAAC-UGGCUCACAUUUGCACUUCUUCCGGGCAACUUGAGGCAUGGCACGUC .(((((...((((((((.......)))))))).....(((((....-.)))))...)))))....((((.((....)).))))........... ( -22.70, z-score = -0.84, R) >droYak2.chr3R 13730358 93 - 28832112 CGCAGGAUUCAAUGAACACAAUGGGUUCAUUGCUUGAGGGUUUAAC-UGGCUCACAUUUGCACUUCUUCCGGGCAACUUGAGGCAUGGCACGUC ..((((...((((((((.......)))))))))))).(((((....-.))))).....(((....((((.((....)).))))....))).... ( -23.70, z-score = -0.53, R) >droEre2.scaffold_4770 5525788 93 + 17746568 CGUAGAAUUCAAUGAACACAUUGGGUUCAUUGCUUGAGGGUUUAAC-UGGCUCACAUUUGCACUUCUUCCGGCCAACUUGAGGCUUGGCACGUC ....((((((((((....))))))))))..(((.((.(((((....-.))))).))...))).......(((((((........))))).)).. ( -24.60, z-score = -1.07, R) >droPer1.super_0 8289905 88 + 11822988 CGAAGGCGCCACGGAGGGC----GUUCCAUUGAUUAAACAUUUCUCUUGGUAUUCACUCAUUAAAUGGCCGAGUAUUCUUUGCUUUCAUGCU-- .((((((((((.((((((.----(((..........)))..))))))))))....((((...........)))).......)))))).....-- ( -18.20, z-score = 0.23, R) >dp4.chr2 16859254 88 - 30794189 CGAAUUCGCCACUGAGGGC----GUGCCAUUGAUUAAAGAUUUCUCUUGGUAUUCACUCAUUAAAUGGCCGAGUAUUCUUUGCUUUCAUGCU-- ...((((((((.((((.(.----((((((..((.........))...)))))).).)))).....))).))))).......((......)).-- ( -19.00, z-score = -0.29, R) >consensus CGCAGAAUUCAAUGAACACAAUGGGUUCAUUGCUUGAGGGUUUAAC_UGGCUCACAUUUGCACUUCUUCCGGGCAACUUGAGGCAUGGCACGUC .........((((((((.......)))))))).....(((((......))))).....(((....((((.((....)).))))....))).... (-14.00 = -12.44 + -1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:33 2011