| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,399,967 – 9,400,085 |
| Length | 118 |
| Max. P | 0.977468 |
| Location | 9,399,967 – 9,400,085 |
|---|---|
| Length | 118 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.54 |
| Shannon entropy | 0.46273 |
| G+C content | 0.38392 |
| Mean single sequence MFE | -22.71 |
| Consensus MFE | -12.31 |
| Energy contribution | -11.48 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.977468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9399967 118 + 27905053 CCACAAAAA-CCAAUGCGGUUAGACCCCCAGACCACUCUCUGUCCAUUCGGAGUUUUAUCUAAGCCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGACACAAUAAA .........-((..(((((((.((....((((......)))).......((.((((.....))))))............)))))))))...))..((((((......))))))...... ( -25.30, z-score = -3.07, R) >droSim1.chr3R 15493435 117 - 27517382 --CCACAAAACCAAUGCGGUUAGACCCCCAGACCACUCUACGUCCAUUCGGAGUUUUAUCUAAGCCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGACACAAUAAA --........((..(((((((.((......(((........))).....((.((((.....))))))............)))))))))...))..((((((......))))))...... ( -23.90, z-score = -2.82, R) >droSec1.super_0 8513300 117 - 21120651 --CCACAAAACCAAUGCGGUUAGACCCCCAGACCACUCUACGUCCAUUCGGAGUUUUAUCUAAGCCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGACACAAUAAA --........((..(((((((.((......(((........))).....((.((((.....))))))............)))))))))...))..((((((......))))))...... ( -23.90, z-score = -2.82, R) >droYak2.chr3R 13708783 116 + 28832112 --CCACAAAACCAAUGCGGUUAG-CCCCCAGAUCUCUCUCCGUUUAUUCGGAGUUUUAUCUAAGCCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGGCACAAUAAA --........((..(((((((.(-(....((((....(((((......)))))....))))..))..(((....)))....)))))))...))..((((((......))))))...... ( -25.30, z-score = -2.55, R) >droEre2.scaffold_4770 5504255 116 - 17746568 --CCACAAAACCAAUGCGGUUAG-CCCCCAGAACUCUCUCCGUCCAUUCGGAGUUUUAUCUAAGCCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGGCACAAUAAA --........((..(((((((.(-(....(((.....(((((......))))).....)))..))..(((....)))....)))))))...))..((((((......))))))...... ( -24.00, z-score = -2.20, R) >droAna3.scaffold_13340 1950283 109 + 23697760 --CCACGAAACCAAUGCGGUUUA-CCCCCCGAUAGC------UCUAUA-GGAGUUUUAUCUAAGACCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGACACAAUAAA --........((..(((((((..-......((((((------((....-.))))..))))...((..(((....)))..)))))))))...))..((((((......))))))...... ( -21.90, z-score = -2.45, R) >dp4.chr2 16839933 113 + 30794189 --CCGCAAA-CCAGUGCGGUUAG--CACCAGACCAGGACCAGUCCGCA-AGAGUUUUAUCUAAGCCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGACACAAUAAA --.......-((..(((((((..--..........(((....)))((.-(((......)))..))................)))))))...))..((((((......))))))...... ( -24.60, z-score = -2.61, R) >droPer1.super_0 8270166 113 - 11822988 --CCGCAAA-CCAGUGCGGUUAG--CACCAGACCAGGACCAGUCCGCA-AGAGUUUUAUCUAAGCCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGACAUAAUAAA --.......-((..(((((((..--..........(((....)))((.-(((......)))..))................)))))))...))..((((((......))))))...... ( -22.40, z-score = -1.88, R) >droWil1.scaffold_181130 6468894 114 + 16660200 AACCAUAUAACCAAUGCGGUUUA-CCUUUAAAUCAUGCAUAAAUU----GAAGUUUGAUGCAAACCUUAAUAAAUUUAAUCAACCGCAACCGGAAGUGUUAGAAUAAUGACACAAUAAA ..........((..(((((((..-...........(((((((((.----...)))).)))))....((((.....))))..)))))))...))..((((((......))))))...... ( -21.70, z-score = -2.51, R) >droVir3.scaffold_13047 9182360 102 + 19223366 -------CUAUCGAUGCGGUUUA-CCGUCAGCAUGAGCAUA--------GAAAUUU-AUCUAAACCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUCGAAUAAUGACACAAUAAA -------...(((((((((((..-......((....))...--------.((((((-((..........))))))))....)))))).)))))..(((((........)))))...... ( -20.50, z-score = -2.11, R) >droMoj3.scaffold_6540 2692468 104 - 34148556 -----GGCUAUCGAUGCGGUUUA-CCGUCUGCCCGAGCAUA--------GAAAUUU-AUCUAAAUCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUCGAAUAAUGACACAAUAAA -----.....(((((((((((..-.....(((....)))..--------.((((((-((..........))))))))....)))))).)))))..(((((........)))))...... ( -20.40, z-score = -1.11, R) >droGri2.scaffold_14906 10110705 102 - 14172833 -------CUAUCGAUGCGGUUUA-CCGUCUGAAUGAGCAUA--------GAAAUUU-AUCUAAACCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUCGAAUAAUGACACAAUAAA -------...(((((((((((..-...((.....)).....--------.((((((-((..........))))))))....)))))).)))))..(((((........)))))...... ( -18.60, z-score = -1.41, R) >consensus __CCACAAAACCAAUGCGGUUAG_CCCCCAGACCACGCUCAGUCCAUU_GGAGUUUUAUCUAAGCCCAAAUAAAUUUAAUCAACCGCAAUCGGAAGUGUUAGAAUAAUGACACAAUAAA ..........((..(((((((......((....................)).((((.....))))................)))))))...))..(((((........)))))...... (-12.31 = -11.48 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:27 2011