| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,398,838 – 9,398,909 |
| Length | 71 |
| Max. P | 0.723512 |
| Location | 9,398,838 – 9,398,909 |
|---|---|
| Length | 71 |
| Sequences | 11 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 68.90 |
| Shannon entropy | 0.60918 |
| G+C content | 0.52448 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -7.92 |
| Energy contribution | -7.63 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9398838 71 - 27905053 UUUACGAGCCAAACUCGUGCCAUUUCUGGCUUUCUGGCCAUAUGGUGGAG--CAUUGGAGUUCUGGCCAGCUU .....(.(((((((((((.(((((..(((((....)))))...))))).)--)....))))).)))))..... ( -23.20, z-score = -1.13, R) >droSim1.chr3R 15491796 63 + 27517382 UUUACGAGCCAAACUCGUGCC--------AUUUCUGGCCAUAUGGUGGAG--CAUCGGAGUUCUGGCCAGCUU ..((((((.....))))))..--------....(((((((.......(((--(......)))))))))))... ( -19.11, z-score = -0.80, R) >droSec1.super_0 8512168 55 + 21120651 UUUACGAGCCAAACUCGUGCC--------AUUUCUGGCCAUAUGGCGG----------AGUUCUGGCCAGCUU .....(.(((((((((.((((--------((..........)))))))----------)))).)))))..... ( -18.90, z-score = -1.94, R) >droYak2.chr3R 13707684 60 - 28832112 UUUACGAGCCAAACUCGUGCC--------UUUGCUGGCCAUAUGGUGGAG--CAUUGGAGUUUUGGCCAG--- .....(.(((((((((((((.--------((..(((......)))..)))--)))..))).)))))))..--- ( -19.40, z-score = -1.25, R) >droAna3.scaffold_13340 1949213 55 - 23697760 UUUACGAGCCAAACUCGUGCC-----------AUUGGCCAUAUGGUGGAG----UUCUAGUUCUGGCCAG--- ..((((((.....))))))..-----------..((((((...(.(((..----..))).)..)))))).--- ( -17.50, z-score = -1.83, R) >dp4.chr2 16838463 60 - 30794189 UUUACGAGCCCGACUCGAGCC-----------AUUGACCAUAUGGUGAAGGCGAGUGGUGCCGCUGCCGCU-- ....((((.....)))).(((-----------.((.(((....))).))))).((((((......))))))-- ( -20.90, z-score = -1.71, R) >droPer1.super_0 8268692 62 + 11822988 UUUACGAGCCCGACUCGUGCC-----------AUUGACCAUAUGGUGAAGGCGAGUGGUGCCGCUGCCGCUUC ...(((((.....)))))(((-----------.((.(((....))).)))))(((((((......))))))). ( -23.00, z-score = -2.15, R) >droWil1.scaffold_181130 6468007 65 - 16660200 UUUACGAGCCAAACUCGUGCCAUU----GACCGACCACCAUAUGGCGAAGA-AGGUGUGCUCCGCGCCAC--- ...(((((.....)))))((((((----(.........)).))))).....-.((((((...))))))..--- ( -18.20, z-score = -1.56, R) >droVir3.scaffold_13047 9181153 62 - 19223366 UUUAUGAGCCAAACUCGUGCC-----------AUUGACCAUAUGGUGAAGGUGAGCGCAAUUCCUGCAGGAUU .....(((.....)))(((((-----------(((.(((....)))...)))).))))...(((....))).. ( -15.30, z-score = -0.64, R) >droMoj3.scaffold_6540 2691200 62 + 34148556 UUUACGAGCCAAACUCGUGCC-----------AUUGACCAUAUGGUGAAGGUGAGCGCAAUUCCUACCGGAUU .....(((.....)))(((((-----------(((.(((....)))...)))).))))...(((....))).. ( -15.30, z-score = -1.13, R) >droGri2.scaffold_14906 10109799 62 + 14172833 UUUACGAGCUAAACUCGUGCC-----------AUUGACCAUAUGGUGAAGGUGAGCGCAAUUCCUGCAGGAUU .....(((.....)))(((((-----------(((.(((....)))...)))).))))...(((....))).. ( -15.60, z-score = -0.92, R) >consensus UUUACGAGCCAAACUCGUGCC___________AUUGACCAUAUGGUGAAG__GAGUGGAGUUCCGGCCAG_UU ..((((((.....))))))...............(.(((....))).)......................... ( -7.92 = -7.63 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:26 2011