| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,395,152 – 9,395,266 |
| Length | 114 |
| Max. P | 0.858267 |
| Location | 9,395,152 – 9,395,266 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.42 |
| Shannon entropy | 0.11847 |
| G+C content | 0.37611 |
| Mean single sequence MFE | -25.91 |
| Consensus MFE | -20.88 |
| Energy contribution | -21.01 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9395152 114 + 27905053 CAGCUUCCUUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU--CUGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUCCAUGCA---- ..((....((((((((((..((..(((((.(((((((...))))))).)))))..)).................(--((((.((....)).))))))))))))))).......)).---- ( -26.40, z-score = -2.68, R) >droPer1.super_0 8265329 114 - 11822988 CAGCUUCCUUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU--CUGCCUCAUUUGGUGCAGAGAAUGAAAAGUUUCCACACA---- ........((((((((((..((..(((((.(((((((...))))))).)))))..)).................(--((((.((....)).)))))))))))))))..........---- ( -24.50, z-score = -1.78, R) >dp4.chr2 16835206 114 + 30794189 CAGCUUCCUUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU--CUGCCUCAUUUGGUGCAGAGAAUGAAAAGUUUCCACACA---- ........((((((((((..((..(((((.(((((((...))))))).)))))..)).................(--((((.((....)).)))))))))))))))..........---- ( -24.50, z-score = -1.78, R) >droAna3.scaffold_13340 1945470 115 + 23697760 CAGCUUCCUUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUUU-CUGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUCCAUGCA---- ..((....((((((((((..((..(((((.(((((((...))))))).)))))..))..................(-((((.((....)).))))))))))))))).......)).---- ( -26.40, z-score = -2.67, R) >droEre2.scaffold_4770 5499346 114 - 17746568 CAGCUUCCUUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU--CUGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUCCAUGCA---- ..((....((((((((((..((..(((((.(((((((...))))))).)))))..)).................(--((((.((....)).))))))))))))))).......)).---- ( -26.40, z-score = -2.68, R) >droYak2.chr3R 13703934 114 + 28832112 CAGCUUCCUUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU--CUGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUCCAUGCA---- ..((....((((((((((..((..(((((.(((((((...))))))).)))))..)).................(--((((.((....)).))))))))))))))).......)).---- ( -26.40, z-score = -2.68, R) >droSec1.super_0 8508566 114 - 21120651 CAGCUUCCUUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU--CUGCCUCAUUUGAUGCAGAGAAUAAAAAGUUUCCAUGCA---- ..((...((((((.......((..(((((.(((((((...))))))).)))))..))..............((((--((((.((....)).)))))))).)))))).......)).---- ( -23.80, z-score = -2.21, R) >droSim1.chr3R 15488202 114 - 27517382 CAGCUUCCUUUUCAAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU--CUGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUCCAUGCA---- ..((...(((((((......((..(((((.(((((((...))))))).)))))..))..............((((--((((.((....)).))))))))))))))).......)).---- ( -28.20, z-score = -3.22, R) >droWil1.scaffold_181130 6464803 118 + 16660200 CAGCUUCCGUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU--CUGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUCCCUAGCUGCA (((((....(((((((((..((..(((((.(((((((...))))))).)))))..)).................(--((((.((....)).))))))))))))))........))))).. ( -29.30, z-score = -3.10, R) >droVir3.scaffold_13047 9178475 116 + 19223366 CAGCUUCCGUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGGUUGCCUUUGUAUACAUUUUUUUUCCGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUUCAUGCA---- ..((.....((((((((.(((..((((((.(((((((...))))))).)))))).........................((.((....)).)).)))))))))))........)).---- ( -26.22, z-score = -1.78, R) >droMoj3.scaffold_6540 2688231 115 - 34148556 CAGCUUCCGCUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGGUUGCCUUUGUAUACAUUUUUUU-CCGGCUCAUUUGAUCCACAGAAUGAAAAGUUUUCAUGCA---- ..((....((((((((((..((.((((((.(((((((...))))))).)))))).))...................-..((.((....)).))...))))).)))))......)).---- ( -23.10, z-score = -0.81, R) >droGri2.scaffold_14906 10107150 115 - 14172833 CAACUUCCGUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGGUUGCCUUUGUAUACAUUUUUUU-CCGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUUCUUGCA---- .........((((((((.(((..((((((.(((((((...))))))).))))))......................-..((.((....)).)).)))))))))))...........---- ( -25.70, z-score = -1.97, R) >consensus CAGCUUCCUUUUUCAUUUCUCGUCCGUUACGUUUGAGUGAUUCAAACUUGACGUUUGCCUUUGUAUAAAUUUUUU__CUGCCUCAUUUGAUGCAGAGAAUGAAAAGUUUCCAUGCA____ .........((((((((.(((...(((((.(((((((...))))))).)))))..........................((.((....)).)).)))))))))))............... (-20.88 = -21.01 + 0.13)
| Location | 9,395,152 – 9,395,266 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.42 |
| Shannon entropy | 0.11847 |
| G+C content | 0.37611 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -21.13 |
| Energy contribution | -20.73 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9395152 114 - 27905053 ----UGCAUGGAAACUUUUCAUUCUCUGCAUCAAAUGAGGCAG--AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAAAGGAAGCUG ----.((..(....)((((((((((((((.((....)).))))--).....................((((..((((((.....))))))......)))).).)))))))).....)).. ( -25.70, z-score = -2.33, R) >droPer1.super_0 8265329 114 + 11822988 ----UGUGUGGAAACUUUUCAUUCUCUGCACCAAAUGAGGCAG--AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAAAGGAAGCUG ----.....(....)((((((((((((((..(....)..))))--).....................((((..((((((.....))))))......)))).).))))))))......... ( -23.50, z-score = -1.11, R) >dp4.chr2 16835206 114 - 30794189 ----UGUGUGGAAACUUUUCAUUCUCUGCACCAAAUGAGGCAG--AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAAAGGAAGCUG ----.....(....)((((((((((((((..(....)..))))--).....................((((..((((((.....))))))......)))).).))))))))......... ( -23.50, z-score = -1.11, R) >droAna3.scaffold_13340 1945470 115 - 23697760 ----UGCAUGGAAACUUUUCAUUCUCUGCAUCAAAUGAGGCAG-AAAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAAAGGAAGCUG ----.((..(....)((((((((((((((.((....)).))))-)......................((((..((((((.....))))))......)))).).)))))))).....)).. ( -25.70, z-score = -2.34, R) >droEre2.scaffold_4770 5499346 114 + 17746568 ----UGCAUGGAAACUUUUCAUUCUCUGCAUCAAAUGAGGCAG--AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAAAGGAAGCUG ----.((..(....)((((((((((((((.((....)).))))--).....................((((..((((((.....))))))......)))).).)))))))).....)).. ( -25.70, z-score = -2.33, R) >droYak2.chr3R 13703934 114 - 28832112 ----UGCAUGGAAACUUUUCAUUCUCUGCAUCAAAUGAGGCAG--AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAAAGGAAGCUG ----.((..(....)((((((((((((((.((....)).))))--).....................((((..((((((.....))))))......)))).).)))))))).....)).. ( -25.70, z-score = -2.33, R) >droSec1.super_0 8508566 114 + 21120651 ----UGCAUGGAAACUUUUUAUUCUCUGCAUCAAAUGAGGCAG--AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAAAGGAAGCUG ----.((..(....)((((((((((((((.((....)).))))--).....................((((..((((((.....))))))......)))).).)))))))).....)).. ( -23.50, z-score = -1.73, R) >droSim1.chr3R 15488202 114 + 27517382 ----UGCAUGGAAACUUUUCAUUCUCUGCAUCAAAUGAGGCAG--AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUUGAAAAGGAAGCUG ----.....((...(((((((((((((((.((....)).))))--).....................((((..((((((.....))))))......)))).)))..)))))))....)). ( -25.40, z-score = -2.07, R) >droWil1.scaffold_181130 6464803 118 - 16660200 UGCAGCUAGGGAAACUUUUCAUUCUCUGCAUCAAAUGAGGCAG--AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAACGGAAGCUG ..(((((.((....))(((((((((((((.((....)).))))--).....................((((..((((((.....))))))......)))).).))))))).....))))) ( -29.60, z-score = -3.05, R) >droVir3.scaffold_13047 9178475 116 - 19223366 ----UGCAUGAAAACUUUUCAUUCUCUGCAUCAAAUGAGGCGGAAAAAAAAUGUAUACAAAGGCAACCGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAACGGAAGCUG ----...........((((((((((((((.((....)).)))........................((((...((((((.....))))))...))))..))).))))))))(....)... ( -23.80, z-score = -1.24, R) >droMoj3.scaffold_6540 2688231 115 + 34148556 ----UGCAUGAAAACUUUUCAUUCUGUGGAUCAAAUGAGCCGG-AAAAAAAUGUAUACAAAGGCAACCGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAGCGGAAGCUG ----.............((((((((((...........(((..-.................)))..((((...((((((.....))))))...)))))).)).))))))(((....))). ( -25.61, z-score = -1.24, R) >droGri2.scaffold_14906 10107150 115 + 14172833 ----UGCAAGAAAACUUUUCAUUCUCUGCAUCAAAUGAGGCGG-AAAAAAAUGUAUACAAAGGCAACCGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAACGGAAGUUG ----.............((((((((((((.((....)).))).-......................((((...((((((.....))))))...))))..))).))))))(((....))). ( -25.10, z-score = -1.66, R) >consensus ____UGCAUGGAAACUUUUCAUUCUCUGCAUCAAAUGAGGCAG__AAAAAAUUUAUACAAAGGCAAACGUCAAGUUUGAAUCACUCAAACGUAACGGACGAGAAAUGAAAAAGGAAGCUG .....((..(....)((((((((((((((.((....)).))).............(((...(((....)))..((((((.....)))))))))......))).)))))))).....)).. (-21.13 = -20.73 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:25 2011