| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,389,482 – 9,389,579 |
| Length | 97 |
| Max. P | 0.685329 |
| Location | 9,389,482 – 9,389,579 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.35 |
| Shannon entropy | 0.32798 |
| G+C content | 0.44609 |
| Mean single sequence MFE | -23.63 |
| Consensus MFE | -14.52 |
| Energy contribution | -14.99 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9389482 97 - 27905053 UCACAGCAGUUUUAAGGCUCCUUGCAAUCAUUGCGCACAAUAAACAAACA-AAUGACGAGCCUUUAACUGACUGCCC-AUGACCAAAAUAGAUGGCAGC----- ......(((((..(((((((...(((.....)))..........((....-..))..))))))).))))).(((((.-...............))))).----- ( -22.69, z-score = -1.87, R) >droSim1.chr3R 15482247 97 + 27517382 UCACAGCAGUUUUAAGGCUCCUUGCAAUCAUUGCGCACAAUAAACAAACG-AAUGACGAGCCUUUAACUGACUGCCC-AUGACCAAAAUAGAUGGCAGC----- ......(((((..(((((((...(((.....)))..........((....-..))..))))))).))))).(((((.-...............))))).----- ( -22.69, z-score = -1.79, R) >droSec1.super_0 8503049 97 + 21120651 UCACAGCAGUUUUAAGGCUCCUUGCAAUCAUUGCGCACAAUAAACAAACG-AAUGACGAGCCUUUAACUGACUGCCC-AUGACCAAAAUAGAUGGCAAC----- ...((((((((..(((((((...(((.....)))..........((....-..))..))))))).))))).)))...-.((.(((.......)))))..----- ( -22.60, z-score = -2.40, R) >droYak2.chr3R 13696619 97 - 28832112 UCACAGCAGUUUUAAGGUUCCUUGCAAUCAUUGCGCACAAUAAACAAACG-AAUGACGAGCCUUUAACUGACUGCCC-AUGACCAAAAUAGCGGGCAGC----- ......(((((..(((((((...(((.....)))..........((....-..))..))))))).))))).((((((-..............)))))).----- ( -24.44, z-score = -1.81, R) >droEre2.scaffold_4770 5493529 95 + 17746568 UCACAGCAGUUUUAAGGAUCCUUGCAAUCAUUGCGCACAAUAAACAAACG-AAUGACGAGCCUUUAACUGACUGCCC-AUGACCAAAAUAGAUGGCA------- ...((((((((..((((...((((...(((((.((.............))-))))))))))))).))))).))).((-((...........))))..------- ( -16.62, z-score = -0.44, R) >droAna3.scaffold_13340 1940475 98 - 23697760 UCACAGCAGUUUUUAGGCUCCUUCCAAUCAUGGCGUACAAUAAACAAACG-AAUGACGAGCCUUUAACUGACUGCCCAACUGACUGGUUGACUGGCAGU----- ......(((((...((((((.......((((..(((...........)))-.)))).))))))..)))))(((((((((((....)))))...))))))----- ( -28.70, z-score = -2.64, R) >droPer1.super_0 8260821 104 + 11822988 UCAUAGCAGUUUUAAGGCUCCUUGCAAUCAUUGCGAACAAUAAACAAACGAAAUGACGAGCCUUUAACUGACUGCCAGACUGACGGGUUGACUGGUUGACUGCC .....((((((..(((((((.(((((.....)))))........((.......))..))))))).....))))))(((...(((.((....)).)))..))).. ( -25.30, z-score = -1.42, R) >droWil1.scaffold_181130 6460189 95 - 16660200 UCACAGCAGUUUUUAAGGCUCUCGCAAUCAUGGCGCACUAUAAACAAACAGAAUGACGAGCCUUUAACUGACUGGCCAACUGACGGGCAGACAAC--------- ...((((((((...(((((((...((.((.((................)))).))..))))))).))))).)))(((........))).......--------- ( -25.99, z-score = -2.81, R) >consensus UCACAGCAGUUUUAAGGCUCCUUGCAAUCAUUGCGCACAAUAAACAAACG_AAUGACGAGCCUUUAACUGACUGCCC_AUGACCAAAAUAGAUGGCAGC_____ ...((((((((...((((((..((((.....)))).........((.......))..))))))..))))).))).............................. (-14.52 = -14.99 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:23 2011