| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,373,365 – 9,373,418 |
| Length | 53 |
| Max. P | 0.918114 |
| Location | 9,373,365 – 9,373,418 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 88.66 |
| Shannon entropy | 0.20499 |
| G+C content | 0.45616 |
| Mean single sequence MFE | -6.60 |
| Consensus MFE | -6.60 |
| Energy contribution | -6.20 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.20 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.918114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9373365 53 - 27905053 UAUAUUCCCCUCAAACAUUUAGCCAGCUUGGUGUCCAAGUGUCAAUAUUUUCC .........................((((((...))))))............. ( -5.70, z-score = -0.90, R) >droSim1.chr3R 15464908 53 + 27517382 AACAUUCCCCCCUAGCAUUUAGCCAGCUUGGCGUCCAAGUGUCAAUAUUUUCC ..............((((((.(((.....)))....))))))........... ( -7.40, z-score = -1.49, R) >droSec1.super_0 8486820 52 + 21120651 -AAAUUCCCCCCAAACAUUUAGCCAGCUUGGCGUCCAAGUGUCAAUAUUUUCC -.............((((((.(((.....)))....))))))........... ( -7.10, z-score = -1.88, R) >droYak2.chr3R 13680277 50 - 28832112 ---CCUCCCCCGAAACAUUUAGCCAGCUUGGUGUCCAAGUGUCAAUAUUUUCC ---........((((...((..(..((((((...)))))))..))...)))). ( -6.40, z-score = -0.88, R) >droEre2.scaffold_4770 5477146 53 + 17746568 ACCCCUCCCCCGAAACAUUUAGCCAGCUUGGUGUCCAAGUGUCAAUAUUUUCC ...........((((...((..(..((((((...)))))))..))...)))). ( -6.40, z-score = -0.87, R) >consensus _ACAUUCCCCCCAAACAUUUAGCCAGCUUGGUGUCCAAGUGUCAAUAUUUUCC ..............((((((.(((.....)))....))))))........... ( -6.60 = -6.20 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:17 2011