| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,368,465 – 9,368,565 |
| Length | 100 |
| Max. P | 0.509612 |
| Location | 9,368,465 – 9,368,565 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.44000 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -30.10 |
| Energy contribution | -30.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.84 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9368465 100 - 27905053 GUUGCUGCGGUGCAACAAAUGUUGUUAACAAGCAUAUUUUGACAGCUCAACAAGAUGUUGCAGAUGCGCGAACAGCAACUAUACAGAUGCAACAGCAGCA (((((((...((((.....(((((((.....(((...((((.((((((.....)).)))))))))))...))))))).((....)).)))).))))))). ( -30.10, z-score = -0.84, R) >droSim1.chr3R 15459960 100 + 27517382 GUUGCUGCGGUGCAACAAAUGUUGUUAACAAGCAUAUUUUGACAGCUCAACAAGAUGUUGCAGAUGCGCGAACAGCAACUAUACAGAUGCAACAGCAGCA (((((((...((((.....(((((((.....(((...((((.((((((.....)).)))))))))))...))))))).((....)).)))).))))))). ( -30.10, z-score = -0.84, R) >droSec1.super_0 8481937 100 + 21120651 GUUGCUGCGGUGCAACAAAUGUUGUUAACAAGCAUAUUUUGACAGCUCAACAAGAUGUUGCAGAUGCGCGAACAGCAACUAUACAGAUGCAACAGCAGCA (((((((...((((.....(((((((.....(((...((((.((((((.....)).)))))))))))...))))))).((....)).)))).))))))). ( -30.10, z-score = -0.84, R) >consensus GUUGCUGCGGUGCAACAAAUGUUGUUAACAAGCAUAUUUUGACAGCUCAACAAGAUGUUGCAGAUGCGCGAACAGCAACUAUACAGAUGCAACAGCAGCA (((((((...((((.....(((((((.....(((...((((.((((((.....)).)))))))))))...))))))).((....)).)))).))))))). (-30.10 = -30.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:17 2011