| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,359,952 – 9,360,042 |
| Length | 90 |
| Max. P | 0.513569 |
| Location | 9,359,952 – 9,360,042 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 86.36 |
| Shannon entropy | 0.25627 |
| G+C content | 0.41362 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -17.58 |
| Energy contribution | -16.87 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513569 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 9359952 90 + 27905053 GUUGCGUUCGGAUGCGUUAGUAUGGUUUUGCCCCAUUUUGUGGUUAAAACUAGGGAAAGUUUGUUUUUGACAAACUAAAGCAAAUGUGCG ....(((.((..(((.......((((((((.(((.....).)).)))))))).....((((((((...))))))))...)))..)).))) ( -20.20, z-score = -0.24, R) >droPer1.super_0 8231570 81 - 11822988 -----GCUGCGCUGCCUU-GCGUUGCGCC-GCCCGUUUUGUGGUUGAACUAGGUGAAAGUUUGUUUUUGACAAACUAAAGCGCGUGUG-- -----((((((((((((.-..(((..(((-((.......)))))..))).))))...((((((((...))))))))..)))))).)).-- ( -26.20, z-score = -1.13, R) >droEre2.scaffold_4770 5463687 87 - 17746568 GUUGCGUUCGGAUGCGUUAGCAUGGUUUU-CCCCAUUUUGUGGUUAAAACUAGGGAAAGUUUGUUUUUGACAAACUAAAGCAAAUGCG-- .............(((((.((.(((((((-..((((...))))..))))))).....((((((((...))))))))...)).))))).-- ( -23.00, z-score = -1.46, R) >droYak2.chr3R 13666364 87 + 28832112 GUUGCGUUCGGAUGCGUUAGUAUGGUUUU-ACCCAUUUUGUGGUUAAAACUAGGGAAAGUUUGUUUUUGACAAACUAAAGCGAAUGCG-- ...(((((((.((((....))))((((((-(.((((...)))).)))))))......((((((((...))))))))....))))))).-- ( -26.10, z-score = -2.92, R) >droSec1.super_0 8473738 87 - 21120651 GUUGCGUUCGGAUGCGUUAGUAUGGUUUU-ACCCAUUUUGUGGUUAAAACUAGGGAAAGUUUGUUUUUGACAAACUAAAGCAAAUGCG-- ...(((((....(((.......(((((((-(.((((...)))).)))))))).....((((((((...))))))))...)))))))).-- ( -22.40, z-score = -1.71, R) >droSim1.chr3R 15451492 87 - 27517382 GUUGCGUUCGGAUGCGUUAGUAUGGUUUU-CCCCAUUUUGUGGUUAAAACUAGGGAAAGUUUGUUUUUGACAAACUAAAGCAAAUGCG-- ...(((((....(((.......(((((((-..((((...))))..))))))).....((((((((...))))))))...)))))))).-- ( -21.60, z-score = -1.33, R) >consensus GUUGCGUUCGGAUGCGUUAGUAUGGUUUU_CCCCAUUUUGUGGUUAAAACUAGGGAAAGUUUGUUUUUGACAAACUAAAGCAAAUGCG__ .............(((((.((.(((((((...(((.....)))..))))))).....((((((((...))))))))...)).)))))... (-17.58 = -16.87 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:12 2011