| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,356,566 – 9,356,693 |
| Length | 127 |
| Max. P | 0.659010 |
| Location | 9,356,566 – 9,356,693 |
|---|---|
| Length | 127 |
| Sequences | 6 |
| Columns | 128 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Shannon entropy | 0.45607 |
| G+C content | 0.56450 |
| Mean single sequence MFE | -46.48 |
| Consensus MFE | -25.01 |
| Energy contribution | -27.27 |
| Covariance contribution | 2.26 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9356566 127 - 27905053 UUCUAUUUGGGCAGCCCCCGCAGGAUGCUUUUCCACAUUCCCGUGUGCGACCAAGUCUCAUCGCUGAAUCGGGUGGUCGUAUG-GGAUAAGUUGGGUGUAUCCUGGUGGGUGGAUUGGGGGAAUGGAA .(((((((...(((((((((((((((((...(((((..((((..(((((((((.(..(((....)))..)...))))))))))-)))...).)))).))))))).))))).)).)))...))))))). ( -53.00, z-score = -2.25, R) >droSim1.chr3R 15448189 120 + 27517382 UUCUAUUUGGGCAGCCCCCGCAGGAUGCCUUUCCACAUUCCCGUGUGCGACCAAGUCGCAUCGCUGAAUCGGGUGGUUGUAUG-GGAUAAGUGGGGCGUAUCCUGGUGGGUGGAUUGGGGA------- ...........(((((((((((((((((..((((((..(((((((.(((((...)))))((((((......))))))..))))-)))...)))))).))))))).))))).)).)))....------- ( -49.80, z-score = -1.27, R) >droSec1.super_0 8470411 120 + 21120651 UUCUAUUUGGGCAGCCCCCGCAGGAUGCCUUUCCACAUUCCCGUGUGCGACCAAGUCGCAUCGCUGAAUCGGGUGAUCGUAUG-GGAUAAGUGGGACGUAUCCUGGUGGGUGGCUUGGGGA------- .....((..(((.((((.(.((((((((..((((((..(((((((((((((...))))))(((((......)))))...))))-)))...)))))).))))))))).)))).)))..))..------- ( -55.40, z-score = -2.94, R) >droYak2.chr3R 13662873 111 - 28832112 AUCUAUUCGGGCAGCCCCCGCAGGAUGCUCUUGCACAUUACAGUGUGCGACCAAGUCGCAUCGCUGAAUCGGUUGGUCGUACG-GGAUAAGUGGGGCGUAUCCUAGUGGGUG---------------- (((((((.(((..(((((((((((.....))))).........(((((((((((.(((.((......))))))))))))))))-......).)))))...))).))))))).---------------- ( -43.70, z-score = -1.68, R) >droEre2.scaffold_4770 5460252 111 + 17746568 UUCUAUUUGGGCAGCCCCCGCAGGAUGCUUUUCCACAUUACCGUGUGCGACCAAGUCGCAUCGCUGAAUCGGGCGGUCGUAUG-GGAUAAGUGGGGCGUAUCUUGGUGGGUG---------------- .............((((.(.((((((((..((((((.(((((.(((((((((..(......)(((......))))))))))))-)).))))))))).))))))))).)))).---------------- ( -40.20, z-score = -0.47, R) >droAna3.scaffold_13340 1909644 111 - 23697760 UUUUGGUGAAUCACCUUCCGCGGAA-ACCUCACCAC-UGCCUGUGCUCGACCAUGUCGCAUUGCACGGAAGGGUGCUCUUUGGCGGAUUGGAACGCUGUGGGAUGUCCUGUGA--------------- ....((((..(((...(((((.(((-....((((.(-(..((((((.((((...))))....)))))).))))))...))).))))).)))..))))(..((....))..)..--------------- ( -36.80, z-score = -0.35, R) >consensus UUCUAUUUGGGCAGCCCCCGCAGGAUGCCUUUCCACAUUCCCGUGUGCGACCAAGUCGCAUCGCUGAAUCGGGUGGUCGUAUG_GGAUAAGUGGGGCGUAUCCUGGUGGGUGG_______________ ................((((((((((((..((((((....((.(((((((((((((......)))........)))))))))).))....)))))).)))))))).)))).................. (-25.01 = -27.27 + 2.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:09 2011