| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,350,221 – 9,350,272 |
| Length | 51 |
| Max. P | 0.658054 |
| Location | 9,350,221 – 9,350,272 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 74.60 |
| Shannon entropy | 0.41079 |
| G+C content | 0.43237 |
| Mean single sequence MFE | -11.96 |
| Consensus MFE | -7.36 |
| Energy contribution | -7.88 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9350221 51 - 27905053 -------UAAAC----CGACAAAGAAAAGGCACUAUUUAAUUGGUGCCCGAGUUCGUGAUGA -------.....----.......(((..(((((((......)))))))....)))....... ( -12.40, z-score = -2.32, R) >droSec1.super_0 8463811 51 + 21120651 -------UAAAC----CGACAAAGAAAAGGCACUAUUUAAUUGGUGCCCGCGUUCGUGAUGG -------....(----((.((..(((..(((((((......)))))))....))).)).))) ( -14.20, z-score = -2.19, R) >droSim1.chr3R 15443980 51 + 27517382 -------UAAAC----CGACAAAGAAAAGGCACUAUUUAAUUGGUGCCCGCGUUCGUGAUGG -------....(----((.((..(((..(((((((......)))))))....))).)).))) ( -14.20, z-score = -2.19, R) >droYak2.chr3R 13657266 54 - 28832112 -------UAAAC-CAGCGACAAAGAAAAGGCGCUAUUUAAUUGGUGCCCGCGUUCGUGAUGG -------....(-((((((....(....(((((((......)))))))..)..))))..))) ( -14.30, z-score = -1.21, R) >dp4.chr2 16791753 60 - 30794189 CUUACCAAAAACGAAGCUGUGAGAAUAAGGCAAAA-UUAAUUGGCGUAUGAAUAC-CGAUGA (((((.............)))))............-...(((((..(....)..)-)))).. ( -4.72, z-score = 0.81, R) >consensus _______UAAAC____CGACAAAGAAAAGGCACUAUUUAAUUGGUGCCCGCGUUCGUGAUGG ............................(((((((......))))))).............. ( -7.36 = -7.88 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:05 2011