Locus 9831

Sequence ID	dm3.chr3R
Location	9,344,193 – 9,344,296
Length	103
Max. P	0.936805

overview

Window 5

Location	9,344,193 – 9,344,296
Length	103
Sequences	3
Columns	105
Reading direction	reverse
Mean pairwise identity	51.91
Shannon entropy	0.68994
G+C content	0.40194
Mean single sequence MFE	-27.33
Consensus MFE	-7.33
Energy contribution	-6.47
Covariance contribution	-0.87
Combinations/Pair	1.72
Mean z-score	-2.39
Structure conservation index	0.27
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.41
SVM RNA-class probability	0.936805
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 9344193 103 - 27905053
ACUUUGCUCUGGAAGCUAUGGAAAAC--AAGGAGUAUGCAGUAGGUGCCUUUCUUGAUAUUCAACAGGCUUUUGACAGAGUCUGGCACCCUGGGCUCCUGUACAA
.((..(((.....)))...))...((--(.(((((...(((..((((((....(((.....))).((((((......))))))))))))))).)))))))).... ( -30.40, z-score =  -0.36, R)
>anoGam1.chr3R 12670306 105 + 53272125
ACAAUAUUUUGAACGGAAUAAGAGGGUGAGCAAGUCCACCAUGGUCGCAAUGUUGGAUGUUGAAAAGGCAUUUGACAAUGUUUGGCAUGAUGGACUUGUUCAUAA
....((((((....)))))).....(((((((((((((.((((.(.(((.(((..((((((.....))))))..))).)))..).)))).))))))))))))).. ( -40.30, z-score =  -5.45, R)
>triCas2.singleUn_1324 1987 103 + 6015
-AUACAAUUUCCACCUCAUAUACAAAU-AACAAAAUUUCCACUCUCAUAUCUCUUGACAUCGAAAAAGCCUUUGAUACCGUUUGGCAUCAAGGCCUUAUUAUCAA
-.......................(((-((.....((((.....(((.......)))....))))..(((((.(((.((....)).)))))))).)))))..... ( -11.30, z-score =  -1.36, R)
>consensus
ACUAUAAUUUGAACGCAAUAAAAAAAU_AACAAGUAUACCAUAGUCGCAUUUCUUGAUAUUGAAAAGGCAUUUGACAAAGUUUGGCAUCAUGGACUUAUUAACAA
.............................((((((((((((............)))...........(((...(((...))).)))....)))))))))...... ( -7.33 =  -6.47 +  -0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:12:03 2011