| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,324,456 – 7,324,549 |
| Length | 93 |
| Max. P | 0.526902 |
| Location | 7,324,456 – 7,324,549 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 86.58 |
| Shannon entropy | 0.24598 |
| G+C content | 0.53421 |
| Mean single sequence MFE | -27.17 |
| Consensus MFE | -19.46 |
| Energy contribution | -19.52 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.526902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7324456 93 + 23011544 -------------UCCAGA-CCCUUUAUAUUCUGUCGCUCACACGGCCGCCGACAGCUGAGCGACAUUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCAAAAA- -------------....((-(...........((((((((((.(((...)))...).)))))))))....((((....)))))))....(((........)))....- ( -25.50, z-score = -2.23, R) >droSim1.chr2L 7119956 93 + 22036055 -------------UCCAGA-CCCUUUAUUUUCUGUCGCUCACACGGCCGCCGACAGCUGAGCGACAUUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCAAAAA- -------------....((-(...........((((((((((.(((...)))...).)))))))))....((((....)))))))....(((........)))....- ( -25.50, z-score = -2.16, R) >droSec1.super_3 2846777 93 + 7220098 -------------CCCAGA-CCCUUUAUUUUCUGUCGCUCACACGGCCGCCGACAGCUGAGCGACAUUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCAAAAA- -------------....((-(...........((((((((((.(((...)))...).)))))))))....((((....)))))))....(((........)))....- ( -25.50, z-score = -2.20, R) >droYak2.chr2L 16749191 93 - 22324452 -------------UCCAGA-CCCUUUAUUUUCUGUCGCUCACACGGCCGCCGACAGCUGAGCGACAUUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCAAAAA- -------------....((-(...........((((((((((.(((...)))...).)))))))))....((((....)))))))....(((........)))....- ( -25.50, z-score = -2.16, R) >droEre2.scaffold_4929 16245617 93 + 26641161 -------------UCCAGA-CCCUUUAUUUUCUGUCGCUCACACGGCCGCCGACAGCUGAGCGACAUUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCAAAAA- -------------....((-(...........((((((((((.(((...)))...).)))))))))....((((....)))))))....(((........)))....- ( -25.50, z-score = -2.16, R) >droAna3.scaffold_12916 15232363 101 + 16180835 ------UCCAGGUCCGAGAGCCCUUUAUUUUCUGUCGCUCACACCGCCGCGGACAGCUGAGCGACACUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCAAAAA- ------..((((..(((...............((((((((((.(((...)))...).)))))))))....((((....)))).))).))))................- ( -27.70, z-score = -0.89, R) >dp4.chr4_group3 10931889 108 - 11692001 UCCAGCCACUGGGGAUAGGGACCUUUAUUUUUCGUCGGUCACACCGCCACCGACAGCUGAGCGACAUUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCGAAAAA (((..((.....))....)))......((((((((((((.........)))))).((.(.(((((.....((((....))))))))).).))..........)))))) ( -31.10, z-score = -0.86, R) >droPer1.super_1 8046109 108 - 10282868 UCCAGCCACUGGGGAUAGGGACCUUUAUUUUUCGUCGGUCACACCGCCACCGACAGCUGAGCGACAUUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCGAAAAA (((..((.....))....)))......((((((((((((.........)))))).((.(.(((((.....((((....))))))))).).))..........)))))) ( -31.10, z-score = -0.86, R) >consensus _____________UCCAGA_CCCUUUAUUUUCUGUCGCUCACACGGCCGCCGACAGCUGAGCGACAUUAAUGCCUCCUGGCAGUCGCCCUGCACAAAUUAGCAAAAA_ .................................((((((((....((........)))))))))).....((((....)))).......(((........)))..... (-19.46 = -19.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:23 2011