| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,327,072 – 9,327,132 |
| Length | 60 |
| Max. P | 0.808050 |
| Location | 9,327,072 – 9,327,132 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 74.88 |
| Shannon entropy | 0.40445 |
| G+C content | 0.31592 |
| Mean single sequence MFE | -12.81 |
| Consensus MFE | -5.93 |
| Energy contribution | -7.05 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.808050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9327072 60 - 27905053 CACAUUUAAUUACUGUUUAAAUGAAAAG-----------UUAGGAUGCCUUCAAAGGCACCUACCUACAAA ..(((((((.......)))))))...((-----------.((((.(((((....))))))))).))..... ( -16.20, z-score = -4.04, R) >droSim1.chr3R 15413197 67 + 27517382 CACAUUUAAUUACUGUUUGAAUGAAUAGUUAACAAUGUUUUAGGAUGCCUUCAAAGGCAACUACAAA---- .(((((.....(((((((....)))))))....)))))..(((..(((((....))))).)))....---- ( -14.00, z-score = -2.28, R) >droSec1.super_0 8441996 67 + 21120651 CACAUUUAAUUACUGUUUGAAUGAAUAGUUUACAAUGUUUUAGGAUGCCUUCAAAGGCAACUACAAA---- .(((((.....(((((((....)))))))....)))))..(((..(((((....))))).)))....---- ( -14.00, z-score = -2.24, R) >droYak2.chr3R 13635656 66 - 28832112 CACUUUUAAUUACUGCUCG-AUUAAUAGCUGACAUUGUUCUAAGAUGCCUUUAAUCGCACCUUAAAA---- .................((-(((((..((.................))..)))))))..........---- ( -7.03, z-score = -0.59, R) >consensus CACAUUUAAUUACUGUUUGAAUGAAUAGUU_ACAAUGUUUUAGGAUGCCUUCAAAGGCAACUACAAA____ ..(((((((.......)))))))...................((.(((((....))))).))......... ( -5.93 = -7.05 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:57 2011