| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,325,679 – 9,325,777 |
| Length | 98 |
| Max. P | 0.997917 |
| Location | 9,325,679 – 9,325,777 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 65.16 |
| Shannon entropy | 0.46732 |
| G+C content | 0.28762 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -11.04 |
| Energy contribution | -9.83 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.21 |
| SVM RNA-class probability | 0.997917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9325679 98 + 27905053 --AUAGUGUCAAAAAGUAUGCAACAGUACAUUUGAAAUAGGAAAGCCAUACGAAUUUAC-------UGGAUUAUUCUUUCCACAUCAUACUUUUAAACACUACAAAU --.((((((..(((((((((....((((.(((((.....((....))...))))).)))-------)(((........)))....)))))))))..))))))..... ( -23.00, z-score = -4.55, R) >droYak2.chr3R 13634314 93 + 28832112 -----------GAAGGAGUUAACAA-UAUAUUUUAAAUCGGAAAGACGCACGAAUUUACGACAUUCUUAAUUAUGCGUUCUGCUAGACUCCUUUAUAAACUAUAA-- -----------(((((((((.....-...........((.....)).(((.((....(((.(((........)))))))))))..)))))))))...........-- ( -16.70, z-score = -1.93, R) >droSec1.super_0 8440637 98 - 21120651 AUAUAGUAUCAAAAAGUGUGAAAAAUUACAUUUUAAAUCGAAAAGCCAUAUGAAUUUAC-------UGGAUUAUUCUUUCCACAUCAUACUUUUAAGCACUACAA-- ...((((....((((((((((.(((((.(((..................))))))))..-------((((........))))..))))))))))....))))...-- ( -15.27, z-score = -2.06, R) >consensus __AUAGU_UCAAAAAGUGUGAAAAA_UACAUUUUAAAUCGGAAAGCCAUACGAAUUUAC_______UGGAUUAUUCUUUCCACAUCAUACUUUUAAACACUACAA__ ...........(((((((((((((......)))).....((((((.......((((((........))))))...))))))....)))))))))............. (-11.04 = -9.83 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:56 2011