| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,304,589 – 9,304,695 |
| Length | 106 |
| Max. P | 0.570486 |
| Location | 9,304,589 – 9,304,695 |
|---|---|
| Length | 106 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 79.93 |
| Shannon entropy | 0.40383 |
| G+C content | 0.42165 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -14.00 |
| Energy contribution | -14.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9304589 106 + 27905053 CGAAAUGGUUAGUUUCACUUUUUGCGUCACAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGAGGCUGCGUCUCGUCCCCAAUCCCCAAUCCCGGAUCUUGA (((.(((..(((((((((..((((.....))))((((((((((........))))))))))..)))))))))))).)))......((((........))))..... ( -24.60, z-score = -1.02, R) >droAna3.scaffold_13340 1862608 99 + 23697760 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGGCUGGGCCUCGUCUCAGAUCUUGGGGCUCGU------- .(((((.....))))).........((((.(..((((((((((........))))))))))...).)))).((((((((..........))))))))..------- ( -29.70, z-score = -2.44, R) >droYak2.chr3R 13612727 105 + 28832112 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGAGGCUGCGCCUCGUCCCCAAUCCCCAAUCC-GGAUCUUGA .((...((((((((((((((((((...))))))((((((((((........))))))))))..))))))))).)))...))....((((.......-))))..... ( -26.80, z-score = -1.47, R) >droSec1.super_0 8419866 106 - 21120651 CGAAAUGGUUAGUUUCACCUUCUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGAGGCUGCGUCUCGUCCCCAAUCCCCAAUCCCGGAUCUUGA (((.(((..(((((((((.(((((...))))).((((((((((........))))))))))..)))))))))))).)))......((((........))))..... ( -26.70, z-score = -1.53, R) >droSim1.chr3R 15390172 106 - 27517382 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGAGGCUGCGUCUCGUCCCCAAUCCCCAAUCCCGGAUCUUGA (((.(((..(((((((((((((((...))))))((((((((((........))))))))))..)))))))))))).)))......((((........))))..... ( -25.20, z-score = -1.00, R) >droGri2.scaffold_14906 10032553 90 - 14172833 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUAUGCCUGAGCCAUGGUCCCCGUCUU---------------- .(((((.....)))))(((....((.((((...((((((((((........))))))))))((....))))))))...))).........---------------- ( -18.70, z-score = -0.60, R) >droVir3.scaffold_13047 9106872 90 + 19223366 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGCCUGGGCCCUCACCCGGUCCUC---------------- .(((((.....))))).......(((.(((...((((((((((........)))))))))).).)))))..(((((.......)))))..---------------- ( -21.90, z-score = -0.96, R) >droMoj3.scaffold_6540 2607024 92 - 34148556 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGCCCUGAACUGGGCUCGAGUCUCCA-------------- .(((((.....)))))((((...((((......((((((((((........))))))))))))))(.((((......)))).))))).....-------------- ( -23.40, z-score = -1.43, R) >droWil1.scaffold_181130 6376563 80 + 16660200 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGGCUGUGCCUCGU-------------------------- (((...(((((((..(((((((((...))))))((((((((((........))))))))))..)))..)))).)))))).-------------------------- ( -20.60, z-score = -1.88, R) >droPer1.super_0 8177592 80 - 11822988 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGGCUGGGCCUCGU-------------------------- (((...(((((((..(((((((((...))))))((((((((((........))))))))))..)))..))).))))))).-------------------------- ( -20.60, z-score = -1.71, R) >dp4.chr2 16750176 80 + 30794189 CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGGCUGGGCCUCGU-------------------------- (((...(((((((..(((((((((...))))))((((((((((........))))))))))..)))..))).))))))).-------------------------- ( -20.60, z-score = -1.71, R) >consensus CGAAAUGGUUAGUUUCACUUUUUGCGUCAGAAAUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGGCUGGGCCUCGUCCCCAAUCCC________________ .(((((.....))))).......((((......((((((((((........))))))))))))))......................................... (-14.00 = -14.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:49 2011