| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,298,929 – 9,298,985 |
| Length | 56 |
| Max. P | 0.566380 |
| Location | 9,298,929 – 9,298,985 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 88.23 |
| Shannon entropy | 0.19889 |
| G+C content | 0.68123 |
| Mean single sequence MFE | -19.74 |
| Consensus MFE | -18.14 |
| Energy contribution | -18.34 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566380 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 9298929 56 + 27905053 ----CAUCCCCCCGCCGAGGGUCCGGUGUCCGCCGACAAAAUGUCCGGCGGCUGUCGUCA ----......(((.....)))..((..(.((((((((.....)).)))))).)..))... ( -20.30, z-score = -0.70, R) >droSim1.chr3R 15384553 59 - 27517382 AACCUCCCCCCC-GCCGAGGGUCCGGUGUCCGCCGACAAAAUGUCCGGCGGCUGUCGUCA ..((((......-...))))...((..(.((((((((.....)).)))))).)..))... ( -20.30, z-score = -0.59, R) >droSec1.super_0 8414254 60 - 21120651 AACCUCCCCCCCCGCCGAGGGUCCGGUGUCCGCCGACAAAAUGUCCGGCGGCUGUCGUCA ..........(((.....)))..((..(.((((((((.....)).)))))).)..))... ( -20.30, z-score = -0.53, R) >droYak2.chr3R 13607114 54 + 28832112 ------UUUCCCCGCCGAGUGUCCGGUGUCCGCCGACAAAAUGUCCGGCGGCUGUCGUCA ------......(((((......))))).((((((((.....)).))))))......... ( -18.90, z-score = -1.63, R) >droEre2.scaffold_4770 5404735 54 - 17746568 ------CUACCCCGCCGAGUGUCCGGUGUCCGCCGACAAAAUGUCCGGCGGCUGUCGUCA ------......(((((......))))).((((((((.....)).))))))......... ( -18.90, z-score = -1.46, R) >consensus ______CCCCCCCGCCGAGGGUCCGGUGUCCGCCGACAAAAUGUCCGGCGGCUGUCGUCA ............(((((......))))).((((((((.....)).))))))......... (-18.14 = -18.34 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:46 2011