| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,266,419 – 9,266,532 |
| Length | 113 |
| Max. P | 0.893427 |
| Location | 9,266,419 – 9,266,532 |
|---|---|
| Length | 113 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.68 |
| Shannon entropy | 0.46653 |
| G+C content | 0.43069 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -13.47 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9266419 113 + 27905053 ACACUCAUUCUCAUACUGAUACUAUUCGAAUC--GGAGAGUCAGUCAAUUAUUUGGCCCAAAUAUUUGCCACUGACUUGACAUAUUUCUCCACUUUACGAAGAGUGCCGGGCGAU ...............(((.((((.((((((..--((((((...(((((.....((((..........)))).....)))))....))))))...)).)))).)))).)))..... ( -25.60, z-score = -1.43, R) >droSim1.chr3R 15350691 113 - 27517382 AUACUCAUACUCAUACUGAUACUAUUCGACUC--GGAGAGUCAGUCAAUUAUUUGGCCCAAAUAUUUGCCACUGACUUGACAUAUUUCUCCACUUUACGAAGAGUGCCGGGCGAU .........................(((.(((--((.(((((((((((.((((((...)))))).)))..))))))))............((((((....)))))))))))))). ( -28.60, z-score = -2.57, R) >droYak2.chr3R 13573908 113 + 28832112 ACUCUCGCACUCACACUCAUACUAUACGAAUC--GGAGAGUCAGUCAAUUAUUUGGGCCAAAUAUUUGCCACUGACUUGACAUAUUUCUCCACUUUGCGAAGAGUGCCGGGCGAU ....((((.((..(((((..............--(..(((((((((((.((((((...)))))).)))..))))))))..)....(((.(......).))))))))..)))))). ( -29.80, z-score = -2.14, R) >droEre2.scaffold_4770 5371900 106 - 17746568 -------CACUCACACUCAUACUAUACGACUC--GGAGAGUCAGUCAAUUAUUUGGCCCAAAUAUUUGCCACUGACUUGACAUAUUUCUCCACUUUGCGCAGAGUGCCGGGCGAU -------...................((.(((--((.(((((((((((.((((((...)))))).)))..))))))))............((((((....))))))))))))).. ( -28.20, z-score = -2.59, R) >droAna3.scaffold_13340 1825268 102 + 23697760 -------------AACAGUUUGUCCUUGACUUCAGUACAGUCAGUCAAUUAUUUGGACCAAAUAUUUGCCACUGGCUUGACAUAUUCCCCCACUUUACGGGUAGUGCCGAGCGAU -------------..((((.......(((((.......)))))(.(((.((((((...)))))).))).)))))(((((.(((...(((.........)))..))).)))))... ( -22.70, z-score = -0.57, R) >dp4.chr2 16712933 91 + 30794189 --------------------UCUCUCCUAUUC---GGCAG-CAGUCAAUUAUUUGGGGCAAAUAUUUGCUUCUGACUUGACAUAUUUCUCUACUUGGCGUCGAGUGCUCAGAGAU --------------------(((((..(((((---(((.(-(.(((((......(((((((....)))))))....)))))........(.....)))))))))))...))))). ( -25.30, z-score = -1.87, R) >droPer1.super_0 8139911 91 - 11822988 --------------------UCUCUCCUAUUC---GGCAG-CAGUCAAUUAUUUGGGGCAAAUAUUUGCUUCUGACUUGACAUAUUUCUCUUCUUGGCGUCGAGUGCUCAGAGAU --------------------(((((..(((((---(((.(-(.(((((......(((((((....)))))))....)))))........(.....)))))))))))...))))). ( -25.30, z-score = -1.77, R) >droSec1.super_0 8381708 112 - 21120651 ACACUCAUACUCAUACUGAUACUAUUCGACUC--GGAGAGUCAGUCAAUUAUUUGGCCCAAAUAUUUGCUACUGACUUGACAUAUUUCUCCACUUUACGA-GAGUGUCGGGCAAU ...............((((((((.((((....--((((((((((((((.((((((...)))))).)))..))))))..........)))))......)))-)))))))))..... ( -28.70, z-score = -2.87, R) >consensus ________ACUCAUACUGAUACUAUUCGACUC__GGAGAGUCAGUCAAUUAUUUGGCCCAAAUAUUUGCCACUGACUUGACAUAUUUCUCCACUUUACGAAGAGUGCCGGGCGAU ......................................((((((((((.((((((...)))))).)))..))))))).............((((((....))))))......... (-13.47 = -13.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:36 2011