| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,300,551 – 7,300,654 |
| Length | 103 |
| Max. P | 0.552938 |
| Location | 7,300,551 – 7,300,654 |
|---|---|
| Length | 103 |
| Sequences | 9 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.27 |
| Shannon entropy | 0.46400 |
| G+C content | 0.39813 |
| Mean single sequence MFE | -15.87 |
| Consensus MFE | -7.24 |
| Energy contribution | -7.29 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7300551 103 - 23011544 GCGCCAAACCUGCACUUGAUUUCC----CUCCACUG-AUCUCCACAGUCUGACGCAAUAAUUAAGUCAUUUUAAUUAUUAGAUGACAGCCACCAAAAGC---AGAACCAAA----- .........((((..((((((..(----.((.((((-.......))))..)).)....))))))(((((((........)))))))...........))---)).......----- ( -15.60, z-score = -1.50, R) >droSim1.chr2L 7095808 102 - 22036055 GCGCCAAA-CUGCACUUGAUUUCC----CUCCACUG-AUCUCCACAGUCUGACGCAAUAAUUAAGUCAUUUUAAUUAUUAGAUGACAGCCACCAAAAGC---AGAACCAAA----- (((.((.(-(((.....((((...----.......)-)))....)))).)).))).........(((((((........))))))).((........))---.........----- ( -18.30, z-score = -2.45, R) >droSec1.super_3 2822966 103 - 7220098 GCGCCAAACCUGCACUUGAUUUCC----CUCCACUG-AUCUCCACAGUCUGACGCAAUAAUUAAGUCAUUUUAAUUAUUAGAUGACAGCCACCAAAAGC---AGAACCAAA----- .........((((..((((((..(----.((.((((-.......))))..)).)....))))))(((((((........)))))))...........))---)).......----- ( -15.60, z-score = -1.50, R) >droYak2.chr2L 16724725 108 + 22324452 GCGCCAAACCUGCACUUGAUUUCC----CUCCACUG-AUCUCCACAGUCUGACGCAAUAAUUAAGUCAUUUUAAUUAUUAGAUGACAGCCACCAAAAGC---AGAACACCACCAAA .........((((..((((((..(----.((.((((-.......))))..)).)....))))))(((((((........)))))))...........))---))............ ( -15.60, z-score = -1.60, R) >droEre2.scaffold_4929 16221188 103 - 26641161 GCGCCAAGCCUGCACUUGAUUUCC----CUCCACUG-AUCUCCACAGUCUGACGCAAUAAUUAAGUCAUUUUAAUUAUUAGAUGACAGCCACCAAAAAC---AGAACCAAA----- (((...((.(((.....((((...----.......)-)))....))).))..))).........(((((((........))))))).............---.........----- ( -15.20, z-score = -1.35, R) >droAna3.scaffold_12916 15207504 109 - 16180835 GCGCCAAA-CUGCACUUGAUUCUCCGUUCUCCAUUG-AUCUCCACAGUCUGACGCAAUAAUUAAGUCAUUUUAAUUAUUAGAUGACAGCCACCCAAGACCAAAAAACCAAA----- (((.((.(-(((.....((((..............)-)))....)))).)).))).........(((((((........))))))).........................----- ( -16.44, z-score = -1.68, R) >dp4.chr4_group3 10904687 103 + 11692001 GCGCCCCG-AUCUACUUGGCAUUC---GGUUUACUAUUUCUCCAUAGUCUGACGCAAUAAUUAAGUCAUUUAAAUUAUUAGAUGACAGCUUCAAAACACACACAAAA--------- (((((...-........)))..((---((...(((((......))))))))).)).........(((((((((....))))))))).....................--------- ( -17.70, z-score = -1.93, R) >droPer1.super_1 8018833 103 + 10282868 GCGCCCCG-AUCUACUUGGCAUUC---GGUUUACUAUUUCUCCAUAGUCUGACGCAAUAAUUAAGUCAUUUAAAUUAUUAGAUGACAGCCUCAAAACACACACAAAA--------- (((((...-........)))..((---((...(((((......))))))))).)).........(((((((((....))))))))).....................--------- ( -17.70, z-score = -1.93, R) >droWil1.scaffold_180772 5427798 79 - 8906247 -------------GCGCCGCCUUU---UUUUUAC----UCUCCAUAGUCUGACGCAAUAAUUAAGUCAUUUAAAUUAUUAGAUGACAAA--CAAAAUGCAC--------------- -------------((((.(.((..---.......----.......)).).).))).........(((((((((....)))))))))...--..........--------------- ( -10.69, z-score = -1.16, R) >consensus GCGCCAAA_CUGCACUUGAUUUCC____CUCCACUG_AUCUCCACAGUCUGACGCAAUAAUUAAGUCAUUUUAAUUAUUAGAUGACAGCCACCAAAAGC___AGAACCAAA_____ ((..............................((((........))))................(((((((........))))))).))........................... ( -7.24 = -7.29 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:21 2011