| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,236,244 – 9,236,352 |
| Length | 108 |
| Max. P | 0.563127 |
| Location | 9,236,244 – 9,236,352 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 66.73 |
| Shannon entropy | 0.62221 |
| G+C content | 0.30811 |
| Mean single sequence MFE | -19.29 |
| Consensus MFE | -7.96 |
| Energy contribution | -8.13 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9236244 108 - 27905053 UGUAAUGGCUUACAUUGCCUUUUGAGUUUCAAUGUUAGCUUAACUGUUGAAAUAAUGAUCAUUAAAUUAAUUCAAAU------AUCUUCGAGUUAUGUUAGCUUUCUCAUUAAA---- .((((((.....))))))....((((.......((((((.(((((.(((((.((((.........)))).)))))..------.......))))).))))))...)))).....---- ( -19.00, z-score = -1.24, R) >droGri2.scaffold_14906 3749090 101 - 14172833 --AAAUGUGGU-UAGUAUCAUCAGAGAGU-GGCACUAACCAAGCCAACCACAAUGUAAGAGAUAUAUUACCGGUAAU----UUCCUUUAAAGAUCGAUCAAAACCGAAA--------- --.....((((-((((..(((......))-)..)))))))).....(((..((((((.....))))))...)))...----............(((........)))..--------- ( -18.20, z-score = -1.13, R) >droSim1.chr3R 15320041 112 + 27517382 UUUAAUGCCUUACAUUGCCUUUCAAGUUUCAAUGCUAGCUUAACUGUUGAAAUAAUGAACAUUAAAUUAAUUCAAAU------AACUUCGAGUUAUGUUAGGCUUCUCACAACCUAAA ......((((.((((.(((....(((((........))))).....(((((.((((.........)))).)))))..------......).)).)))).))))............... ( -16.00, z-score = -0.62, R) >droSec1.super_0 8351308 112 + 21120651 UUUAAUGCCUUACAUUGGCUUUCAAGUUUCAAUGCUAGCUUAACUGUUGAAAUAAUGAACAUUAAAUUAAUUCAAAU------AACUUCGAGUUAUGUUAGGCUUCUCACAAACUAAA ......(((.......))).....(((((.......((((((((..(((((.((((.........)))).)))))((------(((.....)))))))))))))......)))))... ( -21.32, z-score = -2.11, R) >droYak2.chr3R 13543477 106 - 28832112 UAUAAUGCCUUGCAUUGCCUUUCAAGUUUCAAUGCUAGGUUAACUGUUGAAAUAAUGAACAUUAAAUUAGUUCGAAUGACUUCGACUUCGAGUUAUGUUGGGCUCA------------ ......((((.((((((.((....))...)))))).))))....((((.(.....).)))).......(((((((((((((.((....)))))))).)))))))..------------ ( -22.20, z-score = -0.90, R) >droEre2.scaffold_4770 5341753 109 + 17746568 UAUAAUGCCUUACAUUGCCUUUUAAGUUUCAAUGCUAGGUUAACUGUUGAAAUAAUGAACAUUAAAUUAAUUCGAAU------AACUUCCAGUUAUGUUGGGCACAAACUAAAAU--- .....(((((.(((..((((....(((......)))))))(((((((((((.((((.........)))).)))))..------......))))))))).)))))...........--- ( -19.00, z-score = -1.14, R) >consensus UAUAAUGCCUUACAUUGCCUUUCAAGUUUCAAUGCUAGCUUAACUGUUGAAAUAAUGAACAUUAAAUUAAUUCAAAU______AACUUCGAGUUAUGUUAGGCUCCUCA_AAA_____ ......((((.((((.((.......((((((((............))))))))..((((...........)))).................)).)))).))))............... ( -7.96 = -8.13 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:32 2011