| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,154,829 – 9,154,943 |
| Length | 114 |
| Max. P | 0.533227 |
| Location | 9,154,829 – 9,154,943 |
|---|---|
| Length | 114 |
| Sequences | 7 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 68.71 |
| Shannon entropy | 0.59608 |
| G+C content | 0.33168 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -8.09 |
| Energy contribution | -10.06 |
| Covariance contribution | 1.97 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9154829 114 - 27905053 ----UUGUUUG-UGUUUUAAUUUAGACAAAUAUUCCGCGUUUGGGGUCAAUUAUAUGGUUGUCCUUACCAAUAACCGUAAUAUA-GCCCAAAGCUAUAGUUCGAAUUAUAGUUAUAGUGC------ ----.((((((-(.(........).)))))))...(((.....((((......(((((((((........))))))))).....-))))..(((((((((....)))))))))...))).------ ( -26.20, z-score = -2.06, R) >droWil1.scaffold_181130 6233644 105 - 16660200 UCUCUUACUUGCUAGCUACUUUUAGCCAAUUAUUCCAAGUUUUGGUC------AAUGGUUGUCGCUACCAUU-----UCGCUUA-GCCCUUAGUCAUAGCAAUAAUUGUAAUAGUUC--------- ..........((((((((....))))((((((((....(((.(((..------((.(((((..((.......-----..)).))-))).))..))).)))))))))))...))))..--------- ( -17.20, z-score = -0.53, R) >dp4.chr2 20845558 111 + 30794189 --------UUG-CUUUUGUUUCUAGACAAAUAUUCCAAG-UUCGGUC-----AAUUAGUUGUCCAUAGUCAUAAUUUACGAACAUAGCUGUAGAUAGAUCAAUGGUCGUGGUCAUGGUCAGACCUU --------...-..((((((....)))))).........-...((((-----.......((.((((..((((.(((((((........))))))).(((.....)))))))..)))).)))))).. ( -22.01, z-score = -0.50, R) >droSim1.chr3R 15239402 113 + 27517382 ----UUGUUUG-UGUUUUAAUUUAGACAAAUAUUCCACG-UUGGGGUCAAUUAAGUGGUUGUCCUUACCAAUAACCGUAAUAUA-UCCCAAAGCUAUAGUUUGAAUUAUAGUUAUAGUGC------ ----.((((((-(.(........).)))))))...(((.-(((((((..((((...((((((........)))))).))))..)-))))))(((((((((....)))))))))...))).------ ( -27.10, z-score = -2.68, R) >droSec1.super_0 8264817 113 + 21120651 ----UUGUUUG-UGUUUUAAUUUAGACAAAUAUUCCACG-UUGGGGUCAAUUAUAUGGUUGUCCUUACCAAUAACCGUAAUAUA-GCCCAAAGCUAUAGUUUGAAUUAUAGUUAUAGUGC------ ----.((((((-(.(........).)))))))...(((.-...((((......(((((((((........))))))))).....-))))..(((((((((....)))))))))...))).------ ( -26.60, z-score = -2.20, R) >droYak2.chr3R 13460082 113 - 28832112 ----UUGUUUG-UGUUUUAAUUUAGACAAAUAUUCCACG-UUGGGUUCAAUUAAAUGGUUGUCCUUACCAAUAACCGCAAUAUA-GCCCAAAGCUAUAGUUUGAAUUAUAGUUCAAGGUC------ ----.((((((-(.(........).)))))))..((...-(((((((..(((...(((((((........))))))).)))..)-))))))(((((((((....)))))))))...))..------ ( -24.00, z-score = -1.86, R) >droEre2.scaffold_4770 5251200 106 + 17746568 ----UUGUUUG-UGUUUUAAUUUAGACAAAUAUUCCAUA-GUGGGUUCAAUUAAAUGGUUGUCCAUACCAAUAUCUGCAAUAUA-GCCCAAAGCUAUAGUUUAAAUUAUAGUU------------- ----.......-.....((((((((((............-(..(((........((((....))))......)))..)..((((-((.....)))))))))))))))).....------------- ( -20.34, z-score = -1.46, R) >consensus ____UUGUUUG_UGUUUUAAUUUAGACAAAUAUUCCACG_UUGGGUUCAAUUAAAUGGUUGUCCUUACCAAUAACCGUAAUAUA_GCCCAAAGCUAUAGUUUGAAUUAUAGUUAUAGUGC______ ............(((((......))))).............(((((........((((((((........)))))))).......))))).(((((((((....)))))))))............. ( -8.09 = -10.06 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:27 2011