Locus 9802

Sequence ID	dm3.chr3R
Location	9,114,580 – 9,114,673
Length	93
Max. P	0.585227

overview

Window 9

Location	9,114,580 – 9,114,673
Length	93
Sequences	10
Columns	113
Reading direction	forward
Mean pairwise identity	77.21
Shannon entropy	0.43153
G+C content	0.58500
Mean single sequence MFE	-34.64
Consensus MFE	-17.32
Energy contribution	-17.58
Covariance contribution	0.26
Combinations/Pair	1.22
Mean z-score	-1.70
Structure conservation index	0.50
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.19
SVM RNA-class probability	0.585227
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 9114580 93 + 27905053
-------------ACUGGGCGGCUACUUGAAAUUCGGGAGCCGGACAUCGCGUAGCC-------GCAGCGUAGCACGAACGUGCGCCAAAACAAGCAAAUCGUGUCGAAGCCA
-------------...((((((((((.(((..(((((...)))))..))).))))))-------))..((..((((((...(((..........)))..))))))))...)). ( -35.30, z-score =  -1.49, R)
>droWil1.scaffold_181130 6197328 98 + 16660200
AGUUAGCGUCGACGGGGGGCAACUACUUGAAAUUCGUCAGCCGGACAUAGCAAUGUC---------------GCACGAACGUGCACCAAAACAAGCAAAUCGUGCCAGACCCA
.....(.(((((((((...(((....)))...)))))).....(((((....)))))---------------((((((...(((..........)))..))))))..))).). ( -26.90, z-score =  -0.35, R)
>droSim1.chr3R 15206244 93 - 27517382
-------------ACUGGGCGGCUACUUGAAAUUCGGGAGCCGGACAUCGCGUAGCC-------GCAGCGUAGCACGAACGUGCGCCAAAACAAGCAAAUCGUGCCGAUGCCA
-------------.....((((((((.(((..(((((...)))))..))).))))))-------)).((((.((((((...(((..........)))..))))))..)))).. ( -38.70, z-score =  -2.16, R)
>droSec1.super_0 8230657 93 - 21120651
-------------ACUGGGCGGCUACUUGAAAUUCGGCAGCCGGACAUCGCGUAGCC-------GCAGCGUAGCACGAACGUGCGCCAAAACAAGCAAAUCGUGCCGAUGCCA
-------------.....((((((((.(((..(((((...)))))..))).))))))-------)).((((.((((((...(((..........)))..))))))..)))).. ( -38.70, z-score =  -2.10, R)
>droYak2.chr3R 13419379 93 + 28832112
-------------ACUGGGCGGCUACUUGAAAUUCGGGAGCCGGACAUCGCGUAGCC-------GCAGCGUGGCACGAACGUGCGCCAAAACAAGCAAGUCGUGCCGCUGCCU
-------------.....((((((((.(((..(((((...)))))..))).))))))-------)).(((((((((((...(((..........)))..))))))))).)).. ( -45.20, z-score =  -2.99, R)
>droEre2.scaffold_4770 5212451 93 - 17746568
-------------GCUGGGCGGCUACUUGAAAUUCGGGAGCCGGACAUCGCGUAGCC-------GCAGCGUGGCACGAACGUGCGCCAAAACAAGCGAAUCGUGCCGCUGCCA
-------------(((..((((((((.(((..(((((...)))))..))).))))))-------)))))(((((((((...(((..........)))..)))))))))..... ( -44.10, z-score =  -2.31, R)
>droVir3.scaffold_12855 7114998 71 - 10161210
-----------CUGUUGG--GGCUACUUGAAAUUCGACAGCCGGACGUCG-----------------------CACGAACGUGCGCCAAAACAAGCAAUUCGUGCCG------
-----------.((((..--(((.....((..((((.....))))..))(-----------------------(((....)))))))..)))).(((.....)))..------ ( -20.40, z-score =  -0.21, R)
>dp4.chr2 20804434 87 - 30794189
-------------UCUGGGCGGCUACUUGAAAUUCGACAGCCGGACAUCGGAGCGUC----------UCACGGCACGAACGUGCGCCAAAACAAGCAAAUCGUGCCACAG---
-------------(((((.(((((..(((.....))).)))))....))))).....----------....(((((((...(((..........)))..)))))))....--- ( -27.90, z-score =  -1.26, R)
>droPer1.super_0 10493197 86 + 11822988
-------------UCUGG-CGGCUACUUGAAAUUCGACAGCCGGACAUCGGAGCGUC----------UCACGGCACGAACGUGCGCCAAAACAAGCAAAUCGUGCCACAG---
-------------.(((.-(((((..(((.....))).)))))(((........)))----------....(((((((...(((..........)))..))))))).)))--- ( -27.40, z-score =  -1.34, R)
>droAna3.scaffold_13340 1669621 100 + 23697760
-------------GAUGGGCAGCUACUUGAAAUUCGGGGGCCGGACAUCGCACUCUCCGGCAAAGCAUCGUGGCACGAACGUGCGCCAAAACAAGCAAAUCGUGCCGCAGCCA
-------------....(((.(((.((((.....)))).((((((..........))))))..)))...(((((((((...(((..........)))..))))))))).))). ( -41.80, z-score =  -2.84, R)
>consensus
_____________ACUGGGCGGCUACUUGAAAUUCGGCAGCCGGACAUCGCGUAGCC_______GCAGCGUGGCACGAACGUGCGCCAAAACAAGCAAAUCGUGCCGCAGCCA
...............((..(((((...((.....))..)))))..)).........................((((((...(((..........)))..))))))........ (-17.32 = -17.58 +   0.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:25 2011