| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,108,123 – 9,108,227 |
| Length | 104 |
| Max. P | 0.996310 |
| Location | 9,108,123 – 9,108,227 |
|---|---|
| Length | 104 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.60 |
| Shannon entropy | 0.52141 |
| G+C content | 0.55601 |
| Mean single sequence MFE | -43.14 |
| Consensus MFE | -25.52 |
| Energy contribution | -26.00 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.91 |
| SVM RNA-class probability | 0.996310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9108123 104 - 27905053 ------GGGGCGGCGGAAGCAGCUGGUGUGGCAGCCAUUUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUACUGCCUAUUAUGUUGGGCGACAU ------(((((((((....).((((..((((((((.((......)).))))))))))))....))))))))(.((((((((((((.....))).))))))))).)..... ( -46.60, z-score = -2.97, R) >anoGam1.chr2R 39199868 90 - 62725911 --------------------CGUGCCAAUCGAUGCGUUGUUGUUGUUGUCCUCCUGCUCGAUGCAGGCCUCCGCCAGCAGUAUCGUGUUGCCGAGCACGUUCGGUGCCAU --------------------(((((....(((((((.((((((((.((....(((((.....)))))....)).)))))))).)))))))....)))))........... ( -29.00, z-score = -0.79, R) >droGri2.scaffold_14906 8417706 104 + 14172833 ------UUAACUGGCGCAGGUGCGCCAGUUGCUGACAUCUUGUUGUUGUUGGCAUCGGCGAUGGCUGUCUCGGCCAAUAUAAAGGUGCUGCCUAUUAUAUUCGGUGCCAU ------.((((((((((....))))))))))..((((......))))..(((((((((...((((((...))))))(((((((((.....))).))))))))))))))). ( -44.40, z-score = -3.38, R) >droWil1.scaffold_181130 6191657 102 - 16660200 --------CGCUCCAGAAGCGGAAGCGGGAGCGGCCAUCUUAUUGUUGUUACCAUCGGCAAUUGCCGUUUCGGCCAAUAUAAAGGUGCUGCCUAUUAAAUUGGGUGUCAU --------.(((((....((....)).)))))(((((((((..(((((...((..((((....))))....)).)))))..))))))..(((((......)))))))).. ( -37.30, z-score = -2.22, R) >droPer1.super_0 10487420 104 - 11822988 ------GUCGUGGCUGAGGAAGCGGGAGCGGCGGCCACCUUGUUGUUGUUGCCGUCAGCAAUGGCCGUCUCGGCCAGUAUGAAGGUGCUGCCUAUUAUGUUGGGCGUCAU ------....((((((((...((....)).(((((((..((((((.((....)).)))))))))))))))))))))........(((.((((((......)))))).))) ( -43.80, z-score = -1.42, R) >dp4.chr2 20798628 104 + 30794189 ------GUCGUGGCUGAGGAAGCGGGAGCGGCGGCCAUCUUGUUGUUGUUGCCGUCAGCAAUGGCCGUCUCGGCCAGUAUGAAGGUGCUGCCUAUUAUGUUGGGCGUCAU ------....((((((((...((....)).((((((((..(((((.((....)).)))))))))))))))))))))........(((.((((((......)))))).))) ( -44.00, z-score = -1.77, R) >droAna3.scaffold_13340 1662761 110 - 23697760 GGGGCAGCAGUGGCGGUAGCGGAAGGUUUGGCGGCCAUCUUGUUGUUGUUGCCAUCGGCAAUGGUCGUCUCGGCUAAUAUGAAAGUGCUUCCUAUUAUGUUGGGUGUCAU ..(((((((.(..((.((((.((......(((((((((..(((((.((....)).)))))))))))))))).))))...))..).)))..((((......)))))))).. ( -35.40, z-score = -0.41, R) >droEre2.scaffold_4770 5205499 104 + 17746568 ------GGGGCGGCGGAAGUGGCUGGUGUGGCGGCCAUCUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUACUGCCUAUUAUGUUGGGCGACAU ------..(((.((....)).))).(((((((((((((..(((((.((....)).)))))))))))))).((.((((((((((((.....))).))))))))).)))))) ( -47.60, z-score = -3.07, R) >droYak2.chr3R 13412486 104 - 28832112 ------GGGGCGGCGGAAGCGGCUGGUGUGGCGGCCAUCUUGUUGUUGUUGCCAUCGGCAAUGGCCGUUUCGGCCAAUAUAAAGGUACUGCCUAUUAUGUUGGGCGACAU ------..(((.((....)).))).(((((((((((((..(((((.((....)).)))))))))))))).((.((((((((((((.....))).))))))))).)))))) ( -46.50, z-score = -2.63, R) >droSec1.super_0 8224193 104 + 21120651 ------GGGGCGGCGGAAGCGGCUGGUGUGGCGGCCAUUUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUACUGCCUAUUAUGUUGGGCGACAU ------..(((.((....)).))).(((((((((((((..(((((.((....)).)))))))))))))).((.((((((((((((.....))).))))))))).)))))) ( -48.90, z-score = -3.36, R) >droSim1.chr3R 15199703 104 + 27517382 ------GGGGCGGCGGAAGCUGCUGGUGUGGCGGCCAUUUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUACUGCCUAUUAUGUUGGGCGACAU ------..((((((....)))))).(((((((((((((..(((((.((....)).)))))))))))))).((.((((((((((((.....))).))))))))).)))))) ( -51.00, z-score = -4.11, R) >consensus ______GGGGCGGCGGAAGCGGCUGGUGUGGCGGCCAUCUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUGCUGCCUAUUAUGUUGGGCGACAU .............................((((((((..((((((.((....)).)))))))))))))).((.((((((((((((.....))).))))))))).)).... (-25.52 = -26.00 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:24 2011