| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,288,417 – 7,288,509 |
| Length | 92 |
| Max. P | 0.519756 |
| Location | 7,288,417 – 7,288,509 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 76.75 |
| Shannon entropy | 0.42463 |
| G+C content | 0.36712 |
| Mean single sequence MFE | -16.77 |
| Consensus MFE | -7.50 |
| Energy contribution | -7.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519756 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 7288417 92 + 23011544 CCUUUUCGCACAUUUAAUCGAAUGGCAUUCGUUAAAUUU-AUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCCCUGCCAUUAAUGCCUCGAGUG----------- .......((.(((((....)))))))(((((........-.((((((((.....))))))))((((((.((...)).))))))....))))).----------- ( -18.30, z-score = -1.73, R) >droPer1.super_1 8005291 95 - 10282868 --------CCUUCGUAAUUGCCUCACUUCUGUUAAAUUU-AUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCUUUGUCAUAAAUACUCGCCCCAUACGAAAAGUG --------..((((((.......................-.((((((((.....)))))))).......((...((.......))..))....))))))..... ( -12.30, z-score = -1.18, R) >dp4.chr4_group3 10891173 95 - 11692001 --------CCUUCGUAAUUGCCUCACUUCUGUUAAAUUU-AUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCUGUGUCAUAAAUACUCGCCCCAUACGAAAAGUG --------..((((((.......................-.((((((((.....)))))))).......((.((((.....))))..))....))))))..... ( -15.10, z-score = -2.02, R) >droAna3.scaffold_12916 15194682 88 + 16180835 UCGUUUCGCACAUUUAAUCGAAUCGCUUUCGAUAAAUUUUAUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCCCUACCAUAAAUACCUC---------------- ..((...((.......((((((.....))))))........((((((((.....)))))))).......))...))............---------------- ( -14.80, z-score = -2.46, R) >droEre2.scaffold_4929 16208693 92 + 26641161 CCUUUUCGCACAUUUAAUCGAAUGGCAUUCGUUAAAUUU-AUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCCCUGCCAUUAAUGCCCCGAGUG----------- .......((.(((((....)))))))(((((........-.((((((((.....))))))))((((((.((...)).))))))....))))).----------- ( -18.50, z-score = -1.92, R) >droYak2.chr2L 16711839 92 - 22324452 CCUUUUCGCACAUUCAAUCGAAUGGCAUUCGUUAAAUUU-AUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCCCUGCCAUUAAGGCCUCCAGUC----------- .......((.(((((....))))))).............-.((((((((.....))))))))............(((.....)))........----------- ( -18.20, z-score = -1.94, R) >droSec1.super_3 2811042 92 + 7220098 CCUUUUCGCACAUUUAAUCGAAUGGCAUUCGUUAAAUUU-AUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCCCUGCCAUUAAUGCCCCGAGUG----------- .......((.(((((....)))))))(((((........-.((((((((.....))))))))((((((.((...)).))))))....))))).----------- ( -18.50, z-score = -1.92, R) >droSim1.chr2L 7083853 92 + 22036055 CCUUUUCGCACAUUUAAUCGAAUGGCAUUCGUUAAAUUU-AUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCCCUGCCAUUAAUGCCCCGAGUG----------- .......((.(((((....)))))))(((((........-.((((((((.....))))))))((((((.((...)).))))))....))))).----------- ( -18.50, z-score = -1.92, R) >consensus CCUUUUCGCACAUUUAAUCGAAUGGCAUUCGUUAAAUUU_AUAAUUAGCAUUGCGCUAAUUAAUUAAUCGCCCUGCCAUUAAUGCCCCGAGUG___________ .........................................((((((((.....)))))))).......................................... ( -7.50 = -7.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:21 2011