| Sequence ID | dm3.chr2L |
|---|---|
| Location | 675,318 – 675,418 |
| Length | 100 |
| Max. P | 0.961693 |
| Location | 675,318 – 675,418 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 96.60 |
| Shannon entropy | 0.06024 |
| G+C content | 0.65000 |
| Mean single sequence MFE | -46.84 |
| Consensus MFE | -45.68 |
| Energy contribution | -46.32 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.961693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 675318 100 - 23011544 UGGUGCCGGUGGGCUGCUGAUUGAACCGCCUGUGGUGGUUCAGUUGGCUCACUUGGGACGGGGACGCCAUCGUCGUGGCCUUUUGCACCGCCCCUCGUCC .(((((....(((((((..(((((((((((...)))))))))))..)).......((.((....))))........)))))...)))))........... ( -46.00, z-score = -1.61, R) >droSim1.chr2L 686100 100 - 22036055 UGGUGCCGGUGGGCUGCUGAUUGAACCGCCUGUGGUGGUUCAGUUGGCUCACUUGGGACGGGGACGCCAUCGUCGUGGCUUCUUGCACCGCCCCUCGUCC .((...(((.((((.((..(((((((((((...)))))))))))..))......((..((((((.(((((....)))))))))))..)))))).))).)) ( -49.10, z-score = -2.59, R) >droSec1.super_14 656801 100 - 2068291 UGGUGCCGGUGGGCUGCUGAUUGAACCGCCUGUGGUGGUUCAGUUGGCUCACUUGGGACGGGGACGCCAUCGUCGUGGCUUCUUGCACCGCCCCUCGUCC .((...(((.((((.((..(((((((((((...)))))))))))..))......((..((((((.(((((....)))))))))))..)))))).))).)) ( -49.10, z-score = -2.59, R) >droYak2.chr2L 666454 100 - 22324452 UGGUGCCGGUGGGCUGCUGUAUGAACCGCCCGUGGUGGUUCAGUUGGCUCGCUUGGGACGCGGACGCCAUCAUCGUGGCUUCUUGCACCGCCCCUCGUCC .(((((.((.((((..(....(((((((((...)))))))))(.((((((((.......))))..)))).)...)..)))))).)))))........... ( -40.90, z-score = -0.12, R) >droEre2.scaffold_4929 737730 100 - 26641161 UGGUGCCGGUGGGCUGCUGAUUGAACCGCCUGUGGUGGUUCAGUUGGCUCACUUGGGACGGGGACGCCAUCAUCGUGGCUUCUUGCACCGCCCCUCGUCC .((...(((.((((.((..(((((((((((...)))))))))))..))......((..((((((.(((((....)))))))))))..)))))).))).)) ( -49.10, z-score = -2.76, R) >consensus UGGUGCCGGUGGGCUGCUGAUUGAACCGCCUGUGGUGGUUCAGUUGGCUCACUUGGGACGGGGACGCCAUCGUCGUGGCUUCUUGCACCGCCCCUCGUCC .((...(((.((((.(((((((((((((((...)))))))))))))))......((..((((((.(((((....)))))))))))..)))))).))).)) (-45.68 = -46.32 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:38 2011