| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,088,334 – 9,088,425 |
| Length | 91 |
| Max. P | 0.530618 |
| Location | 9,088,334 – 9,088,425 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 63.84 |
| Shannon entropy | 0.48920 |
| G+C content | 0.28283 |
| Mean single sequence MFE | -14.07 |
| Consensus MFE | -4.87 |
| Energy contribution | -5.20 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9088334 91 + 27905053 ----------------AUACCUUAAUGAGCCCAUUUAUUGGGCACUUAAAUUUCUAAACGGAUGAAAUGUAAUGAAGCCAUUUCAUAGAACAAAAA-CACCAUCAGAU ----------------.........((((((((.....)))))..................((((((((.........))))))))..........-.....)))... ( -16.40, z-score = -1.87, R) >droYak2.chr3R 13392284 107 + 28832112 AUAGCUCAUAUAUAACUGCUUUAAAUGACCACAUUUAUUUAGCAAUUAAAUUUCUAAAAGGAUGAAAUGUAAUGAAGCCAUUUCAUAGCAUAAAAA-CACAAUCAGAU ...(((......(((.((((.((((((....))))))...)))).))).............((((((((.........))))))))))).......-........... ( -16.20, z-score = -1.27, R) >droSec1.super_0 8204560 70 - 21120651 --------------------------------------UAGGCAAUUACAUUUAUAAAAAGAUGAUAUGUAAUAAAGCCAUUUCAUAGAACAAAAAACACCAUCAGAU --------------------------------------..(((.(((((((((((......)))).)))))))...)))............................. ( -9.60, z-score = -3.15, R) >consensus _____________________U_AAUGA_C_CAUUUAUUAGGCAAUUAAAUUUCUAAAAGGAUGAAAUGUAAUGAAGCCAUUUCAUAGAACAAAAA_CACCAUCAGAU .............................................................((((((((.........))))))))...................... ( -4.87 = -5.20 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:22 2011