| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,067,853 – 9,067,923 |
| Length | 70 |
| Max. P | 0.834220 |
| Location | 9,067,853 – 9,067,923 |
|---|---|
| Length | 70 |
| Sequences | 7 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 68.75 |
| Shannon entropy | 0.52338 |
| G+C content | 0.50935 |
| Mean single sequence MFE | -21.69 |
| Consensus MFE | -9.93 |
| Energy contribution | -8.87 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9067853 70 - 27905053 CCGAGUGAGGCAUGUGUCAACGCACCGGAAUUGCCGG-----AGUCAAAAUACAG-AAAAAAAUAUAAAAUGCCGC-------------- ........((((((((....))).((((.....))))-----.............-.............)))))..-------------- ( -15.90, z-score = -1.53, R) >droSim1.chr3R 15158290 71 + 27517382 CCGAGUGUGGCAUGUGUCAACGCACCGGAAUUGCCGG-----AGUCAAAAUACAGAAAAAAAAUCCAAAAUGCCGC-------------- ......((((((((((....))).((((.....))))-----...........................)))))))-------------- ( -17.90, z-score = -1.58, R) >droSec1.super_0 8183685 71 + 21120651 CUGAGUGUGGCAUGUGUCAACGCACCGGAAUUGCCGG-----AGUCAAAAUAAAGAAAAAAAAUCCAAAAUGCCGC-------------- ......((((((((((....))).((((.....))))-----...........................)))))))-------------- ( -17.90, z-score = -2.09, R) >droYak2.chr3R 13369210 69 - 28832112 CCGAGUGUGGCAUGUGUCAACGCACCGGAAUUGCCGG-----AGUCAAAAUACAG--GAAAAAUACAAAAAGCCGC-------------- ......(((((.(((((....((.((((.....))))-----.))....)))))(--........).....)))))-------------- ( -17.00, z-score = -1.03, R) >droEre2.scaffold_4770 5164702 69 + 17746568 CCGAGUGUGGCAUGUGUCAACGCACCGGAAUUGUCGG-----AGUCAAAAUACAG--AAAAAAUACAAAAAGCCGC-------------- ......(((((.((((....))))((((.....))))-----.............--..............)))))-------------- ( -14.00, z-score = -0.51, R) >dp4.chr2 19768276 90 + 30794189 CCGAUUGCGGUGCGUGUCAACGCACCAGAGUCGUUGGUCGUAUGCCUCAAUACAGCACGAGUGCAGACCCCGACCCAGACCAAGACCUGC ......(((((((((....)))))))((.(((.((((((((((......)))).(((....))).............))))))))))))) ( -33.00, z-score = -2.90, R) >droPer1.super_0 9443641 90 - 11822988 CCGAUUGCGGUGCGUGUCAACGCACCAGAGUCGUUGGUCGUGUGCCUCAAUACAGCACGAGGGCAGACCCCGACCCAGACCAAGACCUGC ......(((((((((....)))))))((.(((.((((((.(((((.........))))).(((..(....)..))).))))))))))))) ( -36.10, z-score = -2.55, R) >consensus CCGAGUGUGGCAUGUGUCAACGCACCGGAAUUGCCGG_____AGUCAAAAUACAG_AAAAAAAUACAAAAUGCCGC______________ ........(((..(((....))).((((.....))))......)))............................................ ( -9.93 = -8.87 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:21 2011