Locus 9797

Sequence ID dm3.chr3R
Location 9,065,361 – 9,065,459
Length 98
Max. P 0.745299
window13443

overview

Window 3

Location 9,065,361 – 9,065,459
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 98.06
Shannon entropy 0.03609
G+C content 0.53878
Mean single sequence MFE -27.08
Consensus MFE -26.72
Energy contribution -26.40
Covariance contribution -0.32
Combinations/Pair 1.07
Mean z-score -1.16
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.57
SVM RNA-class probability 0.745299
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 9065361 98 + 27905053
CAACAACGCGGCCCAACUGAUUCAGCGGAACGUUGGAAACGCUAGAGGCGAAAUUCAGGACUCAGGACUACAACUACGGAGCCAGCGAUAAGUUGGCC
((((..((((((((..(((((((((((...)))))))..(((.....)))....)))).....((........))..)).))).)))....))))... ( -27.20, z-score =  -1.28, R)
>droEre2.scaffold_4770 5162132 98 - 17746568
CAACAACGCGGCCCAACUGAUUCAGCGGAACGUUGGAAACGCUAGAGGCGGAAUUCAGGACUCAGGACUACAACUACGGAGCCAGCGAUAAGUUGGCC
((((..((((((((..(((((((((((...)))))))..(((.....)))....)))).....((........))..)).))).)))....))))... ( -27.40, z-score =  -1.07, R)
>droYak2.chr3R 13366829 98 + 28832112
CAACAACGCGGCCCAACUGAUUCAGCGGAACGUUGGAAAUGCUAGAGGCGCAAUUCAGGACUCAGGACUACAACUACGGAGCCAGCGAUAAGUUGGCC
((((..((((((((..(((((((((((...)))))))..(((.......)))..)))).....((........))..)).))).)))....))))... ( -25.20, z-score =  -0.30, R)
>droSec1.super_0 8181208 98 - 21120651
CAACAACGCGGCCCAACUGAUUCAGCGGAACGUUGGAAACGCUAUAGGCGAAAUUCAGGACUCAGGACUACAACUACGGAGCCAGCGAUAAGUUGGCC
((((..((((((((..(((((((((((...)))))))..(((.....)))....)))).....((........))..)).))).)))....))))... ( -27.20, z-score =  -1.51, R)
>droSim1.chr3R 15155833 98 - 27517382
CAACAACGUGGCCCAACUGAUUCAGCGGAACGUUGGAAACGCUAGAGGCGAAAUUCAGGACUCAGGACUACAACUACGGAGCCAGCGAUAAGUUGGCC
.......((((((...(((((((((((...)))))))..(((.....)))....))))......)).))))..(....).((((((.....)))))). ( -28.40, z-score =  -1.64, R)
>consensus
CAACAACGCGGCCCAACUGAUUCAGCGGAACGUUGGAAACGCUAGAGGCGAAAUUCAGGACUCAGGACUACAACUACGGAGCCAGCGAUAAGUUGGCC
((((..((((((((..(((((((((((...)))))))..(((.....)))....)))).....((........))..)).))).)))....))))... (-26.72 = -26.40 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:20 2011