| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,052,557 – 9,052,649 |
| Length | 92 |
| Max. P | 0.659025 |
| Location | 9,052,557 – 9,052,649 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.73 |
| Shannon entropy | 0.28041 |
| G+C content | 0.34769 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -13.00 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9052557 92 - 27905053 ------------------------ACCCGAAAUUAGGAAUAUUUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG---- ------------------------...........((((((((...((((((.(((...((((((.......))))))..))).))))))...))))))))((.......))....---- ( -20.20, z-score = -2.08, R) >droSim1.chr3R 15142490 92 + 27517382 ------------------------ACCCGAAAUUAGGAAUAUUUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG---- ------------------------...........((((((((...((((((.(((...((((((.......))))))..))).))))))...))))))))((.......))....---- ( -20.20, z-score = -2.08, R) >droSec1.super_0 8168315 91 + 21120651 ------------------------ACCCGAAAUUAGGAAUA-UUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG---- ------------------------...........((((((-((..((((((.(((...((((((.......))))))..))).))))))...))))))))((.......))....---- ( -19.90, z-score = -2.03, R) >droYak2.chr3R 13353600 92 - 28832112 ------------------------ACCCGAAAUUAGGAAUAUUUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG---- ------------------------...........((((((((...((((((.(((...((((((.......))))))..))).))))))...))))))))((.......))....---- ( -20.20, z-score = -2.08, R) >droEre2.scaffold_4770 5149151 92 + 17746568 ------------------------ACCCGAAAUUAGGAAUAUUUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG---- ------------------------...........((((((((...((((((.(((...((((((.......))))))..))).))))))...))))))))((.......))....---- ( -20.20, z-score = -2.08, R) >droAna3.scaffold_13340 1603666 93 - 23697760 -----------------------ACCCAAAAGUUAGGAAUAUUUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAA---- -----------------------............((((((((...((((((.(((...((((((.......))))))..))).))))))...))))))))((.......))....---- ( -20.20, z-score = -1.99, R) >dp4.chr2 19751217 93 + 30794189 -----------------------ACCCCGAAGUUAGGAAUAUUUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG---- -----------------------......(((...((((((((...((((((.(((...((((((.......))))))..))).))))))...))))))))..)))..........---- ( -20.20, z-score = -1.86, R) >droPer1.super_0 9426883 92 - 11822988 ------------------------ACCCGAAGUUAGGAAUAUUUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG---- ------------------------.....(((...((((((((...((((((.(((...((((((.......))))))..))).))))))...))))))))..)))..........---- ( -20.20, z-score = -1.92, R) >droWil1.scaffold_181108 1306646 96 + 4707319 -----------------------UCACCAGAUUUGGAUAUA-UUUGUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAACGAA -----------------------........((((((.(((-((((((((((.(((...((((((.......))))))..))).)))))))).))))).))((.......))....)))) ( -19.30, z-score = -0.99, R) >droVir3.scaffold_12855 6453493 107 + 10161210 ------AACCCCCACCCCCCUGAACAACUGAG--AAAUAUA-UAUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG---- ------.........................(--((((((.-(((.((((((.(((...((((((.......))))))..))).)))))).))))))))))((.......))....---- ( -19.80, z-score = -2.16, R) >droMoj3.scaffold_6540 26148817 113 + 34148556 CACACCCACUCCUACUCCCAC-AUCCUCUGAG--AAAUAUA-UAUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAUG--- .....................-....((((((--((((((.-(((.((((((.(((...((((((.......))))))..))).)))))).))))))))))...)))))........--- ( -20.90, z-score = -2.15, R) >droGri2.scaffold_14906 7820381 94 + 14172833 -------------ACUCC------CCUCUGAG--AAAUAUA-UAUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAC---- -------------.....------..((((((--((((((.-(((.((((((.(((...((((((.......))))))..))).)))))).))))))))))...))))).......---- ( -20.90, z-score = -2.50, R) >consensus ________________________ACCCGAAGUUAGGAAUAUUUUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAG____ ..............................................((((((.(((...((((((.......))))))..))).)))))).......((((......))))......... (-13.00 = -13.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:19 2011