| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,047,744 – 9,047,842 |
| Length | 98 |
| Max. P | 0.604845 |
| Location | 9,047,744 – 9,047,842 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 64.15 |
| Shannon entropy | 0.63805 |
| G+C content | 0.43936 |
| Mean single sequence MFE | -26.79 |
| Consensus MFE | -9.89 |
| Energy contribution | -10.28 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9047744 98 - 27905053 ---------------------CACAAGCGAUUAUAUUAAUGGUCAAGC--CCUUCGGUCUACUAGAAGUAGAAGGGGAUUCCGGCGACCUGGAAUCAUUUAAAGUCGCCAAUCGCUAAUGA ---------------------((..(((((((........((.....(--((((...(((((.....))))))))))...))((((((.((((....))))..)))))))))))))..)). ( -31.70, z-score = -2.90, R) >droSim1.chr3R 15137697 98 + 27517382 ---------------------CACAAGCGAUUAUAUUAAUGGUCAAGC--CCUUCGGUCCACUAGAAAUAGAAGGGGAUUCCGGCGACCUGGAAUCAUUUAAAGUCGCCAAUCGCUAAUGA ---------------------((..(((((((........((.....(--(((((..((.....))....))))))....))((((((.((((....))))..)))))))))))))..)). ( -30.10, z-score = -2.54, R) >droSec1.super_0 8163526 98 + 21120651 ---------------------CACAAGCGAUUAUAUUAAUGGUCAAGC--CCUUCGGUCUACUAGAAAUAGAAGGGGAUUCCGGCGACCUGGAAUCAUUUAAAGUCGCCAAUCGCUAAUGA ---------------------((..(((((((........((.....(--(((((..((.....))....))))))....))((((((.((((....))))..)))))))))))))..)). ( -30.80, z-score = -2.84, R) >droYak2.chr3R 13348921 96 - 28832112 ---------------------CACAAACGAAAAUAUUAUUGUU--AGC--CCUUCGAUCUAGCAGAAAUAGAAGGGGAUUCCGGCGACCUGGAAUCAUUUAAAGUCGCCAAUCGCUAAUGA ---------------------.................(..((--(((--(((((..((.....))....))))).((((..((((((.((((....))))..)))))))))))))))..) ( -23.60, z-score = -1.53, R) >droEre2.scaffold_4770 5144370 98 + 17746568 ---------------------CAGAAACGAAUAGAAUAAUGGUCUAGC--CCUUCGAUCUAGCAGAAAUAGAAGGGGAUUCCGGCGACCUGGAAUCAUUUAAAGUCGCCAAUCGCUAAUGA ---------------------..........(((.....((((....(--(((((..((.....))....))))))((((((((....))))))))..........))))....))).... ( -24.50, z-score = -0.90, R) >droAna3.scaffold_13340 1598882 91 - 23697760 ------------------------------CCGGGGCAAUGGUUUCUCUAUCUUUGAUCUAGUAUAAAUAGAAGGGGAUUCCAUCGGCAUGAAAUCGUUUAAACUUUAAAGUCCCUAAUGA ------------------------------..(((((.((((..(((((.(((................))).)))))..))))....(((....)))............)))))...... ( -19.69, z-score = -0.22, R) >dp4.chr2 19746443 113 + 30794189 CACAGGCGAUGGUAAUGGGAAUGGGAAUGGCAGGGCUCUUGCUCUGAU-GUCGCUGAACUAGUAAAAAUAGAAGGGGAUUCCGCGGGCUUGGAACCAUUUAAAAAUACUAAUGA------- .......((((((..((((..(((((((..((((((....))))))..-.((.((...(((.......))).)).))))))).))..))))..))))))...............------- ( -26.80, z-score = -0.31, R) >droPer1.super_0 9422010 113 - 11822988 CACAGGCGAUGGUAAUGGGAAUGGGAACGGCAGGGCCCUUGCUCUGAU-GUCGCUGAACUAGUAAAAAUAGAAGGGGAUUCCGCGGGCAUGGAACCAUUUAAAAAUACUAAUGA------- ....(((((((.....(((...(((..(....)..)))...)))...)-))))))....(((((....((((...((.(((((......))))))).))))....)))))....------- ( -27.10, z-score = 0.14, R) >consensus _____________________CACAAACGACUAGAUUAAUGGUCUAGC__CCUUCGAUCUAGUAGAAAUAGAAGGGGAUUCCGGCGACCUGGAAUCAUUUAAAGUCGCCAAUCGCUAAUGA ..................................................(((((...............))))).((((((((....))))))))......................... ( -9.89 = -10.28 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:18 2011