| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,275,878 – 7,275,980 |
| Length | 102 |
| Max. P | 0.564922 |
| Location | 7,275,878 – 7,275,980 |
|---|---|
| Length | 102 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 76.77 |
| Shannon entropy | 0.43452 |
| G+C content | 0.58316 |
| Mean single sequence MFE | -35.62 |
| Consensus MFE | -22.51 |
| Energy contribution | -23.91 |
| Covariance contribution | 1.41 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.564922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7275878 102 + 23011544 GCAGGAUUGCUGCUGUCGAGAUCGCCAUUCUGGCCAACCAUCAGCAGCUGGUCCUCGUUUCGCACCUGGCCCAAACCAAAACUCAGGUGGGUG---AGGAUCAUU ........(((((((..(.(...(((.....)))...))..)))))))(((((((((...(.(((((((.............))))))).)))---))))))).. ( -38.32, z-score = -1.83, R) >droSim1.chr2L 7071114 102 + 22036055 GCAGGAUUGCUGCUGUCGAGAUCGCCAUUCUGGCCAACCAUCAGCAGCUGGUCCUCGUUUCGCACCUGGCCCAAACCGAAACUCAGGUGGGUG---AGGAUCAUU (((((((((((((((..(.(...(((.....)))...))..))))))).)))))).))......(((.((((..(((........))))))).---)))...... ( -38.60, z-score = -1.67, R) >droSec1.super_3 2798517 102 + 7220098 GCAGGAUUGCUGCUGUCGAGAUCGCCAUUCUGGCCAACCAUCAGCAGCUGGUCCUCGUUUCGCACCUGGCCCAAACCGAAACUCAGGUGGGUG---AGGAUCAUU (((((((((((((((..(.(...(((.....)))...))..))))))).)))))).))......(((.((((..(((........))))))).---)))...... ( -38.60, z-score = -1.67, R) >droYak2.chr2L 16698119 96 - 22324452 GCAGGAUUGCUGGUGUCGAGAUCGCCGUUCUGGCCCACCAUCAGCAGCUGGUCCUCGUUUCGCACCUGGCCCAAAC------UCAGCUGGGUG---AGGAUCAUU ...((.(((((((((..(....)(((.....)))....)))))))))))((((((((.....)(((..((......------...))..))))---))))))... ( -33.40, z-score = -0.09, R) >droEre2.scaffold_4929 16195757 96 + 26641161 GCAGGGUUGCUGCUGUCGAGAUCGCCAUUCUGGCCAACCAGCAGCAGCUGGUCCUCGUUUCGCACCUGGCCCAAAC------UCAGGUGGGUG---AUGAUCAUU ....(((((((((((..(....)(((.....)))....)))))))))))((((.(((...(.(((((((.......------))))))).)))---).))))... ( -37.20, z-score = -1.19, R) >droAna3.scaffold_12916 15178789 99 + 16180835 GAGGGAUUGCUGCUGUCCAGGUCACCAUUCUGGCCGACCAUCAUGAGCUGAUCCUCGUUUCGCACCUGGCCCAGGC------UCAGGUGGUGGCACAGGACCAUC ...((((.......)))).((((......((((((.((((((.((((((...((..((.....))..))....)))------)))))))))))).)))))))... ( -35.80, z-score = 0.17, R) >dp4.chr4_group3 10876220 86 - 11692001 ----UAGGGCUGCUAUCCAGGUUGCCAUUUC------CCAUAAGCAGCUGAUCCUCACUCCGCACCUGGCAGAGCC------CCAGGCGACAG---AGGAUCAGC ----...(((.(((.....))).))).....------.........((((((((((......(.(((((.......------))))).)...)---))))))))) ( -31.50, z-score = -1.48, R) >droPer1.super_1 7990348 86 - 10282868 ----UAGGGCUGCUAUCCAGGUUGCCAUUUC------CCAUAAGCAGCUGAUCCUCACUCCGCACCUGGCAGAGCC------CCAGGCGACAG---AGGAUCAGC ----...(((.(((.....))).))).....------.........((((((((((......(.(((((.......------))))).)...)---))))))))) ( -31.50, z-score = -1.48, R) >consensus GCAGGAUUGCUGCUGUCGAGAUCGCCAUUCUGGCCAACCAUCAGCAGCUGGUCCUCGUUUCGCACCUGGCCCAAAC______UCAGGUGGGUG___AGGAUCAUU ........(((((((.........((.....))........)))))))(((((((.......(((((((.............))))))).......))))))).. (-22.51 = -23.91 + 1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:20 2011