| Sequence ID | dm3.chr3R |
|---|---|
| Location | 9,016,067 – 9,016,160 |
| Length | 93 |
| Max. P | 0.790252 |
| Location | 9,016,067 – 9,016,160 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 48.70 |
| Shannon entropy | 0.97291 |
| G+C content | 0.51226 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -3.63 |
| Energy contribution | -3.80 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.15 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.790252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 9016067 93 + 27905053 CCUUGUGCCAUCGCUCGGCUUUACCACUUUUUAUUGCGUAUACGCUGGGGCACCCCCAUUACGUAUACGCAGUGUAUUACGCCCCUCCACUCA--------------------- ....(((.....((..((.....))......(((((((((((((.(((((...)))))...)))))))))))))......)).....)))...--------------------- ( -28.70, z-score = -3.54, R) >droSim1.chr3R 15106146 93 - 27517382 CCUUGUGCCAUCGCUCGGCGUUACCACUUUUUAUUGCGUACACGCCGGGGCGGACCCAUCGCGUAUACGCAGUGUAUUACGCCCCUCCAGUCA--------------------- ....(.((....)).)((((((((((........)).))).)))))((((((((..(((.(((....))).)))..)).))))))........--------------------- ( -30.90, z-score = -1.59, R) >droSec1.super_0 8132137 93 - 21120651 CCUUGUGCCAUCGCUCGGCGUUACCACUUUUUAUUGCGUAUACGCCGUGGCGGCCCCAUCGCGUAUACGCAGUGUAUUACGCCCCUCCAGUCA--------------------- ....(.((....)).)(((((..........((((((((((((((.((((.....)))).))))))))))))))....)))))..........--------------------- ( -32.84, z-score = -3.03, R) >droYak2.chr3R 13315747 91 + 28832112 CCUUGCGCCAUCGCUCGGCCUUACCACUUUUUAUUGCGUAUACGCAGUGA-GGGCCCAUCGCGUAUACGCAGUGUAUUACGCCCC-CCAGUCA--------------------- ....(((((.......)))............((((((((((((((.(((.-.....))).))))))))))))))......))...-.......--------------------- ( -28.60, z-score = -2.23, R) >droEre2.scaffold_4770 5112284 92 - 17746568 CCUUGCGCCAUCGCUUGGCCUUACCACUUUUUAUUGCGUAUACGCAGGGA-GGCCCCAUCGCGUAUACGCAGUGUAUUACGCCCCUCCAGUCA--------------------- ....((((((.....))))............((((((((((((((.(((.-...)))...))))))))))))))......))...........--------------------- ( -31.90, z-score = -3.13, R) >droAna3.scaffold_13340 1565760 85 + 23697760 ----------UCGGGCCAUUCGUUUUCCUUUCUCCUUUCUC-CUUUUUACAUUUUUUAUUGCGUAUACGCAGUGUAUUACGCAUGCCACCCCGACG------------------ ----------(((((..........................-.................((((....))))(((.....))).......)))))..------------------ ( -14.30, z-score = -2.12, R) >dp4.chr2 19712889 79 - 30794189 -----------------------CCCCCUGCUGCCCCCGCU-UCUUUGGCGCAUUUCAUUGCGUAUACGCAUUGUAUGAC-AGUGGGCUACCCCUACCCCGCAA---------- -----------------------...((..(((....((((-.....))))(((..((.((((....)))).)).))).)-))..)).................---------- ( -20.30, z-score = -1.25, R) >droPer1.super_0 9387896 79 + 11822988 -----------------------CCCCCUGUUGCCCCCGCU-UCUUUGGCGCAUUUCAUUGCGUAUACGCAUUGUAUGAC-AGUGGGCUACCCCUACCCCGCAA---------- -----------------------.(((((((......((((-.....))))(((..((.((((....)))).)).)))))-)).))).................---------- ( -20.00, z-score = -1.27, R) >droWil1.scaffold_181108 1267310 87 - 4707319 ----CCGUGUCCUUGGUAUUAUUGUAGCUGUCUUUUUGAAU-GUGCUUGUUUCUUU-AUUGCGUAUACGCAGUGUAUUACGAGUAAACUGUUU--------------------- ----(((......))).........................-.(((((((.....(-((((((....)))))))....)))))))........--------------------- ( -16.30, z-score = -0.74, R) >droGri2.scaffold_14906 7777810 110 - 14172833 ----CCUUGUUAUUGUUAUUGUUCUUUUUGCUCUCUGGCUUAGUGCUCAACACUUUUAUUGUGUAUACGCAGUGUAUUAUGAGUCAAGUGCUAUUUGUAUGCAAAUACCGAGCU ----................((((.....((.((.((((((((((.....)))...(((((((....))))))).....))))))))).))((((((....))))))..)))). ( -24.00, z-score = -0.96, R) >consensus ____GCGCCAUCGCUCGGCUUUACCACUUUUUAUUGCGUAUACGCCGGGACGGUCCCAUUGCGUAUACGCAGUGUAUUACGCCCCUCCAGUCA_____________________ ........................................................(((.(((....))).)))........................................ ( -3.63 = -3.80 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:09 2011