| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,975,918 – 8,976,022 |
| Length | 104 |
| Max. P | 0.953207 |
| Location | 8,975,918 – 8,976,022 |
|---|---|
| Length | 104 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 76.76 |
| Shannon entropy | 0.48736 |
| G+C content | 0.47096 |
| Mean single sequence MFE | -31.95 |
| Consensus MFE | -17.23 |
| Energy contribution | -17.27 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8975918 104 + 27905053 AUGGGGCGUCUAGAUGCCUUGGUAUCCUGC-CGAU---UCGUGUUCAACAAAUCACUUUGCCGGCGCAACACUUUAAUGUUGGGGAUUAGGCAUUAAGGUGAGAUUUC .....(((((..(((((....)))))....-.(((---(.((.....)).))))........)))))..((((((((((((........))))))))))))....... ( -30.10, z-score = -0.86, R) >droSim1.chr3R 15065987 104 - 27517382 AUGGAGCGUCUAGAUGCCUUGGUAUCCUGC-CGCU---UCGUGUACAACAAAUCACUUUGCCGGCGCAACACUUUAAUGUCGGGGAUUAGGCAUUAAGGUGAGAUUUC ((((((((.(..(((((....)))))..).-))))---)))).......(((((...((((....))))((((((((((((........)))))))))))).))))). ( -37.20, z-score = -3.04, R) >droSec1.super_0 8092181 104 - 21120651 AUGGAGCGUAUAGAUGCCUUCGUAUCCUGC-CGCU---UCGCGUAAAACAAAUCACUUUGCCGGCGCAACACUUUAAUGUCGGGGAUUAGGCAUUAAGGUGAGAUUUC ..((((((....(((((....)))))....-))))---))((((....((((....))))...))))..((((((((((((........))))))))))))....... ( -34.50, z-score = -2.45, R) >droEre2.scaffold_4770 5071762 107 - 17746568 UCGGGGUGUCUAGAUGCCUUGGCAUCCUGC-UGUCGUAUCGUGCACAACAAAUCACUUUGCUGGCGCAACACUUUAAUGUCGAGGAUUAGGUAUUAAGGUGAGAUUUC .(((((((((.((....)).))))))))).-.(((.....((((.((.((((....)))).))))))..(((((((((..(........)..))))))))).)))... ( -34.10, z-score = -2.10, R) >droYak2.chr3R 13270861 104 + 28832112 UCGGGGCGUCUAGAUGCCUUGGUAUCCUGC-CGCU---UCGUGUUCAACAAAUCACUUUGCUGGCGCAACACUUUAAUGUCGGGGAUUAGGCAUUAAGGUGAGAUUUC .(((((((.(..(((((....)))))..).-))))---)))........(((((...((((....))))((((((((((((........)))))))))))).))))). ( -37.00, z-score = -2.93, R) >droAna3.scaffold_13340 1521504 102 + 23697760 --AGGACGCGUGUGUGUCUC---AGCAUGC-GGUCGCUUUGUAUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCAGGGAUUAGGCAUUAAGGUGAGACUUC --....(((((((.......---.))))))-)(((...((((...(((((((....)))))))..))))((((((((((((........)))))))))))).)))... ( -35.70, z-score = -3.31, R) >dp4.chr2 19676163 100 - 30794189 ----UCGAGGGGGGCAUCUC---AGUAUGC-GGCCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCUGGGAUUAGGCAUUACGGUGAGAUUUC ----.(((((.((((((...---...))))-..)).)))))(((.(((((((....)))))))......((((.(((((((((....))))))))).))))))).... ( -29.10, z-score = -1.83, R) >droPer1.super_0 9351741 100 + 11822988 ----UCGAGGGGGGCAUCUC---AGUAUGC-GGCCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCUGGGAUUAGGCAUUACGGUGAGAUUUC ----.(((((.((((((...---...))))-..)).)))))(((.(((((((....)))))))......((((.(((((((((....))))))))).))))))).... ( -29.10, z-score = -1.83, R) >droWil1.scaffold_181108 1229294 105 - 4707319 --ACGAGGCAUCUUCUACUCCUCACUGUGU-GGCCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCAGGGAUUAGGCAUUAAGGUGAGAUUUG --..((((...........))))..(((((-(((......)))..(((((((....)))))))))))).((((((((((((........))))))))))))....... ( -29.60, z-score = -1.76, R) >droVir3.scaffold_12855 6357479 102 - 10161210 ----UUGGGAUGG-CAGCUC-AUAGUCCGCUGGUCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCAGGGAUUAGGCAUUAACGUGAGAUUUG ----...(((..(-.(((..-.(((....)))...))))..))).(((((((....)))))))......(((.((((((((........)))))))).)))....... ( -25.30, z-score = -0.35, R) >droMoj3.scaffold_6540 26047311 102 - 34148556 ----GCGGCAUGG-CAGCUCCAUAGUGCGC-GGUCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCAGGGAUUAGGCAUUAACGUGAGAUUUG ----(((((...(-(.((........))))-.))))).((((...(((((((....)))))))..))))(((.((((((((........)))))))).)))....... ( -29.80, z-score = -1.09, R) >consensus __GGGGCGUAUAGAUGCCUC_GUAGCCUGC_GGCCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCGGGGAUUAGGCAUUAAGGUGAGAUUUC .................................................(((((...((((....))))((((((((((((........)))))))))))).))))). (-17.23 = -17.27 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:05 2011