| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,958,969 – 8,959,065 |
| Length | 96 |
| Max. P | 0.672541 |
| Location | 8,958,969 – 8,959,065 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.45 |
| Shannon entropy | 0.40643 |
| G+C content | 0.37705 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -16.18 |
| Energy contribution | -16.02 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8958969 96 + 27905053 GGCUUUACGACAUCAGAGCGCUUUGGCAGUU-GCCUUUAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCCACGGUUU----------------------- .(((((........)))))(((.((((((((-((..((((..(.......)..))))..))))))..((((((....))))))....)))).)))..----------------------- ( -25.60, z-score = -2.07, R) >droGri2.scaffold_14906 7724032 111 - 14172833 AGCUUUACGACUUGAAAGCGCUUUGGCACUUUGCCUUAAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCUU------AACAGCAGGCCAUAAUUUGG--- .((..(.((((.(((((((((((.(((.....)))..))))))...))))).)))))..)).(((..((((((....))))))....(((.------...))).)))..........--- ( -24.90, z-score = -0.87, R) >droVir3.scaffold_12855 6346988 111 - 10161210 AGCUUUACGACUUGAAAGCGCUUUGGCACUUUGCCUUAAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCUU------AACAGCCAGCCAUAAUUCGG--- .((..(.((((.(((((((((((.(((.....)))..))))))...))))).)))))..)).(((..((((((....))))))....(((.------...))).)))..........--- ( -24.00, z-score = -0.92, R) >droMoj3.scaffold_6540 26033859 111 - 34148556 AGCUUUACGACUUGAAAGCGCUUUGGCACUUUGGCUUAAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCUU------AACAACCAGCCAUAAUUUGG--- .(((((........)))))....((((....(((.((((((((.........((((....))))...((((((....))))))..))))))------))...)))))))........--- ( -22.60, z-score = -0.61, R) >droWil1.scaffold_181108 1217555 113 - 4707319 GGCUUUACGACUUCAAAGCACUUUAGCAGUU-GCCUUUAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACAUGCUU------AACAGCAUACCAUGAUUUAGAGG .(((((........)))))............-.(((((((.(((((...(((((((.(((.(((...((((((....))))))....))))------)))))))))..)))))))))))) ( -23.30, z-score = -0.84, R) >droPer1.super_0 9342583 116 + 11822988 GGCUUUACGACUUUAAAGCGCUUUGGCAGUU-GCCCUGAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACAUGCUCAGCAGCAGCAACGAGCCAUGAUUUUG--- (((((...........(((((((.(((....-)))..))))))).......(((((.(((((((...((((((....))))))....)))..)))))))))..))))).........--- ( -33.10, z-score = -1.91, R) >dp4.chr2 19667063 116 - 30794189 GGCUUUACGACUUCAAAGCGCUUUGGCAGUU-GCCCUGAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACAUGCUCCGAAGCAGCAACGAGCCAUGAUUUUG--- (((((...........(((((((.(((....-)))..)))))))........((((.(((((((...((((((....))))))....))).....))))))))))))).........--- ( -30.90, z-score = -1.54, R) >droAna3.scaffold_13340 1512499 108 + 23697760 GGCUUUACGACUUCAAAGCGCUUUGGCUGUU-GGCUUUAGUGUUAUUUUUAUGCUGAUUGCAGCUAAUGAAAAUAUAAUUUCAACACGCUC------AGCAACAAGCCACGAUUU----- .(((((........)))))....((((((((-(.((..((((((((((((((((((....))))..)))))))))..........))))).------)))))).)))))......----- ( -27.10, z-score = -1.23, R) >droEre2.scaffold_4770 5062553 96 - 17746568 GGCUUUACGACAUCAGAGCGCUUUGGCAGUU-GCCUUUAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCCAUGGUUU----------------------- .(((((........)))))(((.((((((((-((..((((..(.......)..))))..))))))..((((((....))))))....)))).)))..----------------------- ( -25.60, z-score = -1.99, R) >droYak2.chr3R 13261619 96 + 28832112 GGCUUUACGACAUCAGAGCGCUUUGGCAGUU-GCCUUUAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCCACGGUUU----------------------- .(((((........)))))(((.((((((((-((..((((..(.......)..))))..))))))..((((((....))))))....)))).)))..----------------------- ( -25.60, z-score = -2.07, R) >droSec1.super_0 8082986 96 - 21120651 GGCUUUACGACAUCAGAGCGCUUUGGCAGUU-GCCUUUAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCCACGGUUU----------------------- .(((((........)))))(((.((((((((-((..((((..(.......)..))))..))))))..((((((....))))))....)))).)))..----------------------- ( -25.60, z-score = -2.07, R) >droSim1.chr3R 15056768 96 - 27517382 GGCUUUACGACAUCAGAGCGCAUUGGCAGUU-GCCUUUAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCCACGGUUU----------------------- .(((((........)))))((..((((((((-((..((((..(.......)..))))..))))))..((((((....))))))....))))..))..----------------------- ( -23.50, z-score = -1.32, R) >consensus GGCUUUACGACUUCAAAGCGCUUUGGCAGUU_GCCUUUAGUGUUAUUUUUAUGUUGAUUGCAGCUAAUGAAAUUAUAAUUUCAACACGCUA_G____A_CA_C__GCCAU_AUUU_____ (((.............((((((..(((.....)))...))))))........((((....))))...((((((....))))))....))).............................. (-16.18 = -16.02 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:03 2011