| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,958,364 – 8,958,460 |
| Length | 96 |
| Max. P | 0.608075 |
| Location | 8,958,364 – 8,958,460 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 90.43 |
| Shannon entropy | 0.13130 |
| G+C content | 0.60932 |
| Mean single sequence MFE | -40.97 |
| Consensus MFE | -34.83 |
| Energy contribution | -35.17 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8958364 96 + 27905053 GGUCCGGCGGCCAUUGCUCAAGCAGCGUGCUCAAAUGCCAUUGCACACGGCUGCUGAUGCUGGAUGUUGGCUGCUGGACGCUGGUUGAUGCUGGCG .((((((((((((..((...(((((((((..(((......)))..))).))))))...)).......))))))))))))((..((....))..)). ( -47.30, z-score = -2.86, R) >droSec1.super_0 8082374 88 - 21120651 GGUCCGGCGGCCAUUGCUCAAGCAGCGUGCUCAAAUGCCAUUGCA--CGGCUGCUGAUGCUGGAUGUUGGUUGCUGGAUGCUGGAUGGCG------ .((((((((((((..((...((((((((((............)))--).))))))...)).......))))))))))))(((....))).------ ( -39.70, z-score = -1.83, R) >droSim1.chr3R 15056154 90 - 27517382 GGUCCGGCGGCCAUUGCUCAAGCAGCGUGCUCAAAUGCCAUUGCACACGGCUGCUGAUGCUGGAUGUUGGGUGCUGGAUGCUGGAUGGCG------ .((((((((.(((..((...(((((((((..(((......)))..))).))))))...)).......))).))))))))(((....))).------ ( -35.90, z-score = -0.17, R) >consensus GGUCCGGCGGCCAUUGCUCAAGCAGCGUGCUCAAAUGCCAUUGCACACGGCUGCUGAUGCUGGAUGUUGGCUGCUGGAUGCUGGAUGGCG______ .((((((((((((..((...((((((((((............))))...))))))...)).......))))))))))))................. (-34.83 = -35.17 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:03 2011