| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,930,359 – 8,930,477 |
| Length | 118 |
| Max. P | 0.958221 |
| Location | 8,930,359 – 8,930,477 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.31 |
| Shannon entropy | 0.47840 |
| G+C content | 0.43226 |
| Mean single sequence MFE | -34.60 |
| Consensus MFE | -19.08 |
| Energy contribution | -20.50 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8930359 118 + 27905053 GUUUCUAUUCAUCGGCUGCUUUAUGCGGCUGUUGAACCUGGCUUGUUUAGUUCUAUUAUAGACGUUUAAUUUAUUGGACCCCUAAUUGGGUAGAGCAACUCGGGUUGCAUUGUCAGGG .......((((.(((((((.....))))))).))))((((((..(((((((...((((........))))..)))))))(((.....)))....(((((....)))))...)))))). ( -39.30, z-score = -3.34, R) >droAna3.scaffold_13340 1483793 92 + 23697760 GCAUCUAUUCAUGGG-----UUAUGGGGGCUUUUCAACUGACAUAUG-------GUCAUAAAUAUCUAGUUAAUUGGAUAUCCCAUUGGAAAGGAUUAUCUAUA-------------- ..((((.(((.....-----..((((((..........((((.....-------))))....(((((((....)))))))))))))..))).))))........-------------- ( -16.90, z-score = 0.61, R) >droEre2.scaffold_4770 5034654 118 - 17746568 GCUUCUAUUCAACGGCUGCUUUAUGCGGCUGUUGAACCUGGCUUGUUUAGCUCUAUUAUGGGCGUGUAAUUUAAUGGACCCUUAAUUGCGCAGAGCAACUCAGGUUACAUUGUCAGGG ........(((((((((((.....)))))))))))(((((..((((((.((((......))))((((((((....(....)..)))))))).))))))..)))))............. ( -43.90, z-score = -3.91, R) >droYak2.chr3R 13232912 118 + 28832112 GUUUCUAUUCAUCGGCUGCUUCAUGCGGCUGUUGAACCUGGCUUGUUUAGCUCUAUUACAGGCGUGUAAUUUAUUGGACCCUUAAUUGCGUGCAGCACCUCAGGUUGCAUUGCCAGGG .......((((.(((((((.....))))))).))))((((((.......((...((((.(((.((.(((....))).))))))))).))(((((((.......))))))).)))))). ( -42.80, z-score = -2.98, R) >droSec1.super_0 8054082 118 - 21120651 GUUUCUAUUCAUCGGCUGCUUUAUGCGGCUGUUGAAACUUGCUUGUUUAGCUCCAUUAUAGACGUGUAAUUUAUUGGACUCCUAAUUGCGUAGAGCAACUCGGGUUGCAUUGUCAGGG .......((((.(((((((.....))))))).)))).((((((.....))).........((((((((((((.((((....))))((((.....))))...)))))))).))))))). ( -31.40, z-score = -1.00, R) >droSim1.chr3R 15026214 118 - 27517382 GUUUCUAUUCAUCGGCUGCUUUAUGCGGCUGUUGAAACUGGCUUGUUUAGCUCCAUUAUAGACGUGUAAUUUAUUGGACUCCUAAUUGCGUAGAGCAACUCGGGUUGCAUUGUCAGGG .......((((.(((((((.....))))))).)))).(((((..(((((.........)))))(((((((((.((((....))))((((.....))))...))))))))).))))).. ( -33.30, z-score = -1.35, R) >consensus GUUUCUAUUCAUCGGCUGCUUUAUGCGGCUGUUGAAACUGGCUUGUUUAGCUCUAUUAUAGACGUGUAAUUUAUUGGACCCCUAAUUGCGUAGAGCAACUCAGGUUGCAUUGUCAGGG .......((((.(((((((.....))))))).)))).(((((......................(((((((....((...)).)))))))....(((((....)))))...))))).. (-19.08 = -20.50 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:11:00 2011