| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,263,105 – 7,263,232 |
| Length | 127 |
| Max. P | 0.625255 |
| Location | 7,263,105 – 7,263,232 |
|---|---|
| Length | 127 |
| Sequences | 6 |
| Columns | 127 |
| Reading direction | reverse |
| Mean pairwise identity | 81.03 |
| Shannon entropy | 0.33860 |
| G+C content | 0.45322 |
| Mean single sequence MFE | -33.62 |
| Consensus MFE | -25.94 |
| Energy contribution | -26.55 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7263105 127 - 23011544 UGCCCCAAUGUGAGGGUUGCAAGCGAAAUGUGUCGUAAAGAUUUUUAUUGCAUUUUUAUGGCGCACACGCAGCAGCAGCAUCAGCAACAUCAGCUUCCGCUGCACUCAGAAAAAAACUCCAACUUAA ........(.((((...(((..(((...((((((((((((((.........))))))))))))))..))).)))(((((...(((.......)))...))))).)))).)................. ( -35.10, z-score = -1.07, R) >droSim1.chr2L 7058485 127 - 22036055 UGCCCCAAUGUGAGGGUUGCAAGCCAAAUGUGUCGUAAAGAUUUUUAUUGCAUUUUUAUGGCGCACACGCAGCAGCAGCAUCAGCAACAUCAGCUUCCGCUGCACUCAAAAAAAAACUCCAAUUUAA ..........((((.(((((........((((((((((((((.........))))))))))))))...))))).(((((...(((.......)))...))))).))))................... ( -32.70, z-score = -0.84, R) >droSec1.super_3 2785898 127 - 7220098 UGCCCCAAUGUGAGGGUUGCAGGCGAAAUGUGUCGUAAAGAUUUUUAUUGCAUUUUUAUGGCGCACACGCAGCAGCAGCAUCAGCAACAUCAGCUUCCGCUGCACUCAGAAAAAAACUCCAAUUUAA ........(.((((...(((..(((...((((((((((((((.........))))))))))))))..))).)))(((((...(((.......)))...))))).)))).)................. ( -35.90, z-score = -1.06, R) >droYak2.chr2L 16684729 124 + 22324452 UGCCCCAAUGUGAGGGUUGCAAGCGAAAUGUGUCGUAAAGAUUUUUAUUGCAUUUUUAUGGCGCACACGCAGCAGCAGCAUCAGCAACAUCAGCUUCCGCUGCACUCAGAUCAAA--UUCACUUAU- .......((.((((...(((..(((...((((((((((((((.........))))))))))))))..))).)))(((((...(((.......)))...))))).)))).))....--.........- ( -35.50, z-score = -1.31, R) >dp4.chr4_group3 10861344 102 + 11692001 ---CCCUAUGUGAGGGUUGCAAGCGAAAUGUGUCGUAAAGAUUUUUAUUGCAUUUUUAUGGCGCACACGCAGCAUUAGGAGUAGCAGCAGCAACAUCCUCCACUG---------------------- ---.....((.(((((((((..(((...((((((((((((((.........))))))))))))))..))).((..........))....)))))..))))))...---------------------- ( -30.40, z-score = -1.61, R) >droPer1.super_1 7975449 105 + 10282868 CGGCCCUAUGUGAGGGUUGCAAGCGAAAUGUGUCGUAAAGAUUUUUAUUGCAUUUUUAUGGCGCACACGCAGCAUUAGGAGUAGCAGCAGCAACAUCCUCCACUG---------------------- (((((((.....)))))))...(((...((((((((((((((.........))))))))))))))..)))......((((((.((....)).)).))))......---------------------- ( -32.10, z-score = -1.40, R) >consensus UGCCCCAAUGUGAGGGUUGCAAGCGAAAUGUGUCGUAAAGAUUUUUAUUGCAUUUUUAUGGCGCACACGCAGCAGCAGCAUCAGCAACAUCAGCUUCCGCUGCACUCAGAAAAAA__UCCAAUUUA_ ...(((.......))).(((..(((...((((((((((((((.........))))))))))))))..))).)))(((((...(((.......)))...)))))........................ (-25.94 = -26.55 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:19 2011