| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,841,119 – 8,841,228 |
| Length | 109 |
| Max. P | 0.891457 |
| Location | 8,841,119 – 8,841,228 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 90.07 |
| Shannon entropy | 0.17078 |
| G+C content | 0.48445 |
| Mean single sequence MFE | -36.18 |
| Consensus MFE | -30.06 |
| Energy contribution | -30.94 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8841119 109 + 27905053 UUCGCCGGCUUGAAAAAUCGCAUUUGCGAGUGCCGAAAUAUUGUGGCAUUAAUAUCGC-GCUUAAUGUG-AAUGGCCAUCACUUUAGUUACUGCGAGCCACGAGGCUUUUG--- ...((((((........((((....))))..)))......(((((((.......((((-(((....(((-(.......))))...)))....)))))))))))))).....--- ( -31.21, z-score = -0.81, R) >droEre2.scaffold_4770 4939164 110 - 17746568 UUCGCCGGCUUGAA--AUCGCACUUGCGAGAGCCGAAAUAUUGUGGCAUUAAUAUCGCCGCUCAA--UGGAGUGGCCAUCACUUUAUUUUCUGCGAGCCACGAGGCUUUUGGCG ..(((((((((...--.((((....)))))))))((((..(((((((.........(((((((..--..)))))))..((.(..........).)))))))))...)))))))) ( -41.10, z-score = -2.67, R) >droYak2.chr3R 13136360 109 + 28832112 UUCGCCGGCUUGAAAAAUUGCACUUACAAGAGCCCAAACAUUGUGGCAUUAAUAUCGCCGCUCAA--UGGAGUGGCCAUCACUUUAUUUUCUGCCAGCCACGAGGCUCUUG--- .......((..........)).....((((((((......(((((((.........(((((((..--..))))))).....(..........)...)))))))))))))))--- ( -31.90, z-score = -1.90, R) >droSec1.super_0 7965339 111 - 21120651 UUCGCCGGCUUGAAAAAUCGCACUUGCGAUUGCCGAAAUAUUGUGGCAUUAAUAUCGCCGCUCAAUGUGGAGUGGCCAACACUUUAGUUACUGCGAGCCACGAGGCUUUUG--- ...((((((......((((((....)))))))))......(((((((.........(((((((......))))))).(((......))).......)))))))))).....--- ( -39.20, z-score = -2.85, R) >droSim1.chr3R 14935934 110 - 27517382 UUCGCCGGCUUGAAAAAUCGCACUUGCGAGUGCCAAAAUAUUGUGGCAUUAAUAUCGCCGCUCAA-GUGGAGUGGCCAACACUUUAGUUACUGCGAGCCACGAGGCUUUUG--- ...((((((........((((....))))..)))......(((((((.........(((((((..-...))))))).(((......))).......)))))))))).....--- ( -37.50, z-score = -2.19, R) >consensus UUCGCCGGCUUGAAAAAUCGCACUUGCGAGUGCCGAAAUAUUGUGGCAUUAAUAUCGCCGCUCAA_GUGGAGUGGCCAUCACUUUAGUUACUGCGAGCCACGAGGCUUUUG___ ...((((((........((((....))))..)))......(((((((.........(((((((......)))))))..........((....))..))))))))))........ (-30.06 = -30.94 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:47 2011