| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,833,396 – 8,833,490 |
| Length | 94 |
| Max. P | 0.922832 |
| Location | 8,833,396 – 8,833,490 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 57.44 |
| Shannon entropy | 0.86529 |
| G+C content | 0.46533 |
| Mean single sequence MFE | -22.24 |
| Consensus MFE | -11.41 |
| Energy contribution | -10.64 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.922832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8833396 94 + 27905053 ---------GCCAACUACUGCGACAACGUGGCCGCCGACUACGGCAGUGGUUAGUUUAUACAUGUUACAUGGCUAAGAGUCCUC-AAUCCAAUUGACCCAUUUG------- ---------((((((((((((.....(((((.......)))))))))))))).((....)).........))).........((-(((...)))))........------- ( -20.10, z-score = 0.30, R) >droMoj3.scaffold_6540 25858989 94 - 34148556 --------GAACAGCUACUGCGACAAUGUGGCCACCGAUUACGGCAGUGGUUGGUCCU-UAAAUUGAUUC--AAUUGAAUCCUCGGAUUACUUAUGAAUAUUGUU------ --------.....((....))((((((((((..(((((((((....))))))))))).-......(((((--....)))))................))))))))------ ( -22.30, z-score = -0.98, R) >droGri2.scaffold_14906 7570500 109 - 14172833 UCGUCGUGCAACAGCUACUGCGAUAAUGUCGCCGCCGAUUAUGGCAGUGGUAAGUCGA-AUGU-GAAUCCUUAGUUGCAAGAGCAUAAUCCGUAAUUGUGUUGCUCGCAUC ..(.((.((((((((((((((.(((..((((....))))))).)))))))).......-....-.......(((((((..((......)).))))))))))))).)))... ( -31.20, z-score = -0.82, R) >droVir3.scaffold_12855 6179215 97 - 10161210 ---------AACAGCUACUGCGACAAUGUGGCCGCCGAUUUUGGUAGUGGUAAGUCCC-AUAUUGAAUGCUGUCUCAGUUACACACAUUACUCAAGCGCACCUUAUG---- ---------.........((((.(((((((((..(((....)))..))((.....)))-))))))((((.(((.........))))))).......)))).......---- ( -17.40, z-score = 1.68, R) >droWil1.scaffold_181089 11571407 90 + 12369635 ---------GCCAAUUACUGUGACAAUGUGUCUGCAGAUUAUGGCAGUGGUGAGUUUA-AAUUUAAACAUAUUUUUCUUUUAACCUGAUAAUGGCAUUCA----------- ---------((((((((((((.(.(((.((....)).))).).))))))))..(((((-....))))).......................)))).....----------- ( -20.50, z-score = -1.29, R) >droPer1.super_0 9179909 95 + 11822988 ---------GUCAACUACUGCGAUAGCGUGGGUGCCGACUAUGGCAGUGGUAAGCGAUCAGAUCAGAUGGGAAUGGAGAAAGAGAGGAAAACCUAAACCAAUCC------- ---------((..((((((((.((((((.(....))).)))).))))))))..)).(((......))).(((.(((........(((....)))...))).)))------- ( -25.60, z-score = -1.39, R) >dp4.chr2 19458061 94 - 30794189 ---------GUCAACUACUGCGAUAGCGUGGGUGCCGACUAUGGCAGUGGUAAGCGAUCAGAUCAGAUGGAAUUGGAGAAAGAGUGGAAAACCUAACCCAUUC-------- ---------((..((((((((.((((((.(....))).)))).))))))))..))..((((.((.....)).)))).....((((((..........))))))-------- ( -26.10, z-score = -1.30, R) >droEre2.scaffold_4770 4930790 87 - 17746568 ---------GCCAACUACUGUGACAACGUGGCCGCCGACUACGGCAGUGGUUAGU----ACACACGAUUUGGCUUAG---UCUUUAAUCCAAUUGACACACUU-------- ---------(((((....((((...((.(((((((.(.(....)).)))))))))----.))))....)))))...(---((............)))......-------- ( -21.60, z-score = -0.82, R) >droYak2.chr3R 13127632 87 + 28832112 ---------GCCAACUACUGCGACAACGUGACCGCCGACUACGGCAGUGGUUAGU----GCACACGAUAUGGUUUAA---UUCCUAAUCCAAAUGACCCACUU-------- ---------(((((((((((((....)))....((((....))))))))))).).----))........(((.(((.---....))).)))............-------- ( -18.80, z-score = -0.58, R) >droSec1.super_0 7957647 95 - 21120651 ---------GCCAACUACUGCGACAACGUGGCCGCCGACUACGGCAGUGGUUAGUUUAUAAACGUUACAUGGUUAAGAGUCCUCCAAUCCAAUUGACCCAUUUG------- ---------((.(((((((((.....(((((.......)))))))))))))).))........((((..(((....((....))....)))..)))).......------- ( -20.20, z-score = 0.11, R) >droSim1.chr3R 14928233 95 - 27517382 ---------GCCAACUACUGCGACAACGUGGCCGCCGACUACGGCAGUGGUUAGUUUAUACACGUUACAUGGUUAAGAGUCCUCCAAUCCAAAUGACCCAUUUG------- ---------((.(((((((((.....(((((.......)))))))))))))).))........((((..(((....((....))....)))..)))).......------- ( -20.80, z-score = 0.06, R) >consensus _________GCCAACUACUGCGACAACGUGGCCGCCGACUACGGCAGUGGUUAGUUUA_ACAUGUGAUAUGGUUUAGAAUCCUCAAAUCCAAUUGACCCAUUU________ .............((((((((.....(((((.......)))))))))))))............................................................ (-11.41 = -10.64 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:46 2011