| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,815,791 – 8,815,903 |
| Length | 112 |
| Max. P | 0.514844 |
| Location | 8,815,791 – 8,815,903 |
|---|---|
| Length | 112 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 61.53 |
| Shannon entropy | 0.85305 |
| G+C content | 0.41384 |
| Mean single sequence MFE | -21.45 |
| Consensus MFE | -8.45 |
| Energy contribution | -8.04 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.50 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8815791 112 - 27905053 GGCAUUGUAGAGCACAGGGUGUUCCUUCUGCUUCCAGCCUGCAAUCCUGUAAACACAACUAGUUAGUGAAUCAUACCAAUUGCUUAUACAAUUUCCAAAUAUAAUUCGGUCU ((.(((((((((((((((((((.....(((....)))...)).)))))))...(((.........))).............)))).))))))..))................ ( -21.20, z-score = -0.15, R) >droSim1.chr3R 14911021 111 + 27517382 GGCAUUGUAAAGCACGGGGUGUUCCUUCUGCUUCCAGCCGGCAAUCCUGUAAACCCAACGAGUUAGUAAAUCAUACCAAUUGUUUAUACAAUUUCCAAAUAUUAUUCGGCU- ((.(((((((((((((((((...((..(((....)))..))..)))))))..........((((.(((.....))).)))))))).))))))..))...............- ( -20.30, z-score = 0.39, R) >droSec1.super_0 7940110 111 + 21120651 GGCAUUGUAAAGCACGGGGUGCUCCUUUUGCUUCCAGCCGGCAAUCCUGUAAACCCAACGAGUUAGUAAAUUAUACCAAUUUUGUAUACAAUUUCCAAAUAUAAUUCGGCU- (((..((..(((((..(((....)))..))))).)))))(((.....((......)).((((((((((.....))).....(((....)))..........))))))))))- ( -19.10, z-score = 1.09, R) >droYak2.chr3R 13109730 111 - 28832112 GGCAUUGUAGAGCACGGGAUGUUCCUUCUGCUUCCAGCCGGCAAUCCUGUAAACUCAUCUAGUUAGUAAACCGUAACACAUGAUUAUGCAAAUUCCUAGUAUAAUAAGGCU- (((..(((.(((.(((((((...((..(((....)))..))..)))))))...))).....((((........)))))))..(((((((.........)))))))...)))- ( -22.10, z-score = 0.41, R) >droEre2.scaffold_4770 4913087 111 + 17746568 GGCAUUGUAAAGCACGGGGUGUUCCUUUUGCUUCCAGCCGGCGAUCCUGUAAACUCAACUAGUUAGCAAACCAUAACACAUGUUUUUACAAUUCCUAAGUAUAAUAUGGCU- (((..((..(((((..(((....)))..))))).)))))(((.....(((.((((.....)))).)))..........((((((..(((.........))).)))))))))- ( -22.50, z-score = 0.28, R) >droAna3.scaffold_13340 14339724 111 + 23697760 GGCAUUGUAGAGCACAGGAUGCUCCUUCUGCUUCCAGCCUCCAAUCCUGUAAAAUGAAACAUAAUUAAUGCUUUGAUUUUGCCUUAAACCCAAUCCGAUAGAGGUUAGACU- ((((...(((((((((((((.......(((....)))......)))))))..(((........)))...))))))....))))...(((((.........).)))).....- ( -23.12, z-score = -0.68, R) >dp4.chr2 19440988 90 + 30794189 AGCAUUGUAUAGCACCGGAUGCUCUUUUUGCUUCCAACCCGCAAUCCUGCA-ACCAACCCCCAAGGAAUGCAAUACGAGUAUAGUGUAACU--------------------- .(((((((((......(((.((.......)).))).....(((.((((...-...........)))).))).......)))))))))....--------------------- ( -22.34, z-score = -2.49, R) >droPer1.super_0 9163585 90 - 11822988 AGCAUUGUAUAGCACCGGAUGCUCUUUUUGCUUCCAACCCGCAAUCCUGCA-ACCAACCCACAAGGAAUGCAAUACGAGUAUAGUGUAACU--------------------- .(((((((((......(((.((.......)).))).....(((.((((...-...........)))).))).......)))))))))....--------------------- ( -22.34, z-score = -2.26, R) >droVir3.scaffold_12855 6164229 94 + 10161210 GGCAUUGUAGAGCACCGGAUGUUCCUUUUGCUUCCAGCCGGCAAUCCUG-AAAAUGAUUCGAAAUGAAAUUUAUAGUUUUAUUUUCAUUUUGGGG----------------- (((..((..(((((..((.....))...))))).)))))......(((.-(((((((....(((((((((.....)))))))))))))))).)))----------------- ( -22.60, z-score = -0.79, R) >droMoj3.scaffold_6540 25843442 101 + 34148556 GGCGUUGUAGAGCACAGGAUGCUCCUUCUGCUUCCAGCCCGCAAUCCUGCAUAUGAGACGAGCAUACAUUUCA-AUUAAACACUUAU-----UUACAGAUAUAGGUU----- ((.((((..(((((.(((.....)))..))))).))))))(((....)))...(((((.(......).)))))-.......((((((-----........)))))).----- ( -20.20, z-score = 0.01, R) >droGri2.scaffold_14906 7555554 104 + 14172833 CGCAUUGUAGAGCACUGGAUGCUCUUUUUGCUUCCAGCCAGCAAUCCUACAAAAGAAAAAAUUAUUUACAAAUGACUUUAGGUAUUAAUCUCAAUUAUUUGAUU-------- ....((((((.((.(((((.((.......)).)))))...))....))))))................(((((((.((.((((....)))).)))))))))...-------- ( -20.20, z-score = -1.34, R) >consensus GGCAUUGUAGAGCACGGGAUGCUCCUUUUGCUUCCAGCCGGCAAUCCUGUAAACCCAACCAGUAAGUAAACCAUACCAAUUGUUUAUACAAUUUCCAAAUAUAAUU_G____ ((.(((((...((...(((.((.......)).))).))..))))).))................................................................ ( -8.45 = -8.04 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:44 2011