| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,262,866 – 7,262,961 |
| Length | 95 |
| Max. P | 0.803652 |
| Location | 7,262,866 – 7,262,961 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 94.02 |
| Shannon entropy | 0.10356 |
| G+C content | 0.47574 |
| Mean single sequence MFE | -30.84 |
| Consensus MFE | -24.44 |
| Energy contribution | -24.48 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7262866 95 + 23011544 AAAACCGAUUUCUGUGGCAAGAACGGAAUCGGAAAAUGCAAAAGCAUGUGACGCCCCCUUUGGAAUAGGG-----GCGGACCACCUUAAUUCCUAAUUUG ....((((((.((((.......))))))))))...((((....))))(((.((((((..........)))-----)))...)))................ ( -28.20, z-score = -1.97, R) >droSim1.chr2L 7058234 95 + 22036055 AAAACCGAUUUCUGUGGCAAGCACGGAAUCGGAAAAUGCAAAAGCAUGUGACGCCUCCUUUGGAUUAGGG-----GCGGACCACCUUUAUUCCUAAUUUG ....((((((.(((((.....)))))))))))...((((....))))(((.((((.(((.......))))-----)))...)))................ ( -29.30, z-score = -2.19, R) >droSec1.super_3 2785647 95 + 7220098 AAAACCGAUUUCUGUGGCAAGCACGGAAUCGGAAAAUGCAAAAGCAUGUGACGCCCCCUUUGGAAUAGGG-----GCGGACCACCUUUAUUCCUAAUUUG ....((((((.(((((.....)))))))))))...((((....))))(((.((((((..........)))-----)))...)))................ ( -30.60, z-score = -2.38, R) >droYak2.chr2L 16684346 100 - 22324452 AAAGCCGAUUUCUGUGGCAAGCACGGAAUCGGAAAAUGCAAAAGCAUGUGACGCCCCCUUUGGAAAAGGGACGGGGCGGACCACCUUUACUUCUAAUUUG ....((((((.(((((.....)))))))))))...((((....))))(((.((((((((((....))))...))))))...)))................ ( -33.50, z-score = -2.07, R) >droEre2.scaffold_4929 16182631 94 + 26641161 AAAACCGAUUUCUGUGGCAAGCACGGAAUCGGAAAAUGCAAAAGCAUGUGACGCCCCCUU-GGAAAAGGG-----GCGGACCACCUUUAUUCCUAAUUUG ....((((((.(((((.....)))))))))))...((((....))))(((.((((((.((-....)))))-----)))...)))................ ( -32.60, z-score = -3.01, R) >consensus AAAACCGAUUUCUGUGGCAAGCACGGAAUCGGAAAAUGCAAAAGCAUGUGACGCCCCCUUUGGAAUAGGG_____GCGGACCACCUUUAUUCCUAAUUUG ....((((((.(((((.....)))))))))))...((((....))))(((.(((.((((.......)))).....)))...)))................ (-24.44 = -24.48 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:18 2011