| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,762,867 – 8,762,959 |
| Length | 92 |
| Max. P | 0.605270 |
| Location | 8,762,867 – 8,762,959 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.96 |
| Shannon entropy | 0.36975 |
| G+C content | 0.52980 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -13.22 |
| Energy contribution | -15.42 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8762867 92 - 27905053 ----------CCAGUCUCCAGUCGUCAGCCCCCUCGCUCCACCUUCCACCGUCACGGUCAUUGCAAAUUAAUGGCCUUCAAAGUGGUUAAGCAGCAGGAGAU ----------...((((((.((.((.(((......))).......((((......((((((((.....))))))))......))))....)).)).)))))) ( -23.00, z-score = -1.92, R) >droSim1.chr3R 14858098 92 + 27517382 ----------CCAGUCUCCAGUCGUCAGCCCCCUCGCUCCACCUUCCACCGUCACGGUCAUUGCAAAUUAAUGGCCUUCAAAGUGGUUAAGCAGCAGGAGAU ----------...((((((.((.((.(((......))).......((((......((((((((.....))))))))......))))....)).)).)))))) ( -23.00, z-score = -1.92, R) >droSec1.super_0 7888136 92 + 21120651 ----------CCAGUCUCCAUUCGUCAGCCCCCUCGCUCCACCUUCCACCGUCACGGUCAUUGCAAAUUAAUGGCCUUCAAAGUGGUUAAGCAGCAGGAGAU ----------...((((((....(....)......(((.......((((......((((((((.....))))))))......))))......))).)))))) ( -22.52, z-score = -1.95, R) >droYak2.chr3R 13054093 102 - 28832112 CCAGUAUCCAGAUCCCUCCACCAUCCGCCAUCCGCCAUCCACCUUCCACCGUCACGGUCAUUGCAAAUUAAUGGCCUUCAAAGUGGUUAAGCAGCAGGAGAU ...............((((.......((.....))..........((((......((((((((.....))))))))......))))..........)))).. ( -18.90, z-score = -0.41, R) >droAna3.scaffold_13340 14287086 78 + 23697760 ------------------------UCGCCCACUCCUCCUGAUUCUCCUCCGUCACGGUCAUUGCAAAUUAAUGGCCUUCAAAGUGGUUAAGCAGCAGGAGAU ------------------------.......(((((.(((.....((........((((((((.....))))))))........)).....))).))))).. ( -21.89, z-score = -1.99, R) >consensus __________CCAGUCUCCAGUCGUCAGCCCCCUCGCUCCACCUUCCACCGUCACGGUCAUUGCAAAUUAAUGGCCUUCAAAGUGGUUAAGCAGCAGGAGAU .............((((((.......(((......))).......((((......((((((((.....))))))))......))))..........)))))) (-13.22 = -15.42 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:37 2011