| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,762,598 – 8,762,695 |
| Length | 97 |
| Max. P | 0.779942 |
| Location | 8,762,598 – 8,762,695 |
|---|---|
| Length | 97 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 92.51 |
| Shannon entropy | 0.16321 |
| G+C content | 0.43291 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -20.00 |
| Energy contribution | -20.00 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.779942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8762598 97 - 27905053 UGCCUUUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA---CAGCAGCAUCUGCACACGCAAAACUCAUUG .....(((---(.((((((((((....(((((.((((((....)))))).)))))....)).))).....---..((((...))))))))).))))....... ( -23.30, z-score = -1.42, R) >droSim1.chr3R 14857836 97 + 27517382 UGCCUUUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA---CAGCAGCAUCUGCACACGCAAAACUCAUUG .....(((---(.((((((((((....(((((.((((((....)))))).)))))....)).))).....---..((((...))))))))).))))....... ( -23.30, z-score = -1.42, R) >droSec1.super_0 7887876 97 + 21120651 UGUCUUUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCUUGUGCAUAAUA---CAGCAGCAUCUGCACACGCAAAACUCAUUG .....(((---(.((((((((((....(((((.((((((....)))))).)))))....)).))).....---..((((...))))))))).))))....... ( -24.00, z-score = -1.79, R) >droYak2.chr3R 13053838 97 - 28832112 UGCCUUUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA---CAGCAGCAUCUGCACACGCAAAACUCAUUG .....(((---(.((((((((((....(((((.((((((....)))))).)))))....)).))).....---..((((...))))))))).))))....... ( -23.30, z-score = -1.42, R) >droEre2.scaffold_4770 4857463 97 + 17746568 UGCCUUUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA---CAGCAGCAUCUGCACACGCAAAACUCAUUG .....(((---(.((((((((((....(((((.((((((....)))))).)))))....)).))).....---..((((...))))))))).))))....... ( -23.30, z-score = -1.42, R) >droAna3.scaffold_13340 14286781 97 + 23697760 UGCCUUUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA---CAGCGGCCUCCGCACACGCAAAACUCAUUG .....(((---(.((((((((((....(((((.((((((....)))))).)))))....)).))).....---..((((...))))))))).))))....... ( -24.80, z-score = -1.90, R) >dp4.chr2 19369270 97 + 30794189 UGCCUUUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA---CACCAGACUCGGCACACGCAAAACUCAUUG .....(((---(.(((((.(((.....(((((.((((((....)))))).)))))...(((((.......---)).)))....)))))))).))))....... ( -25.40, z-score = -2.64, R) >droWil1.scaffold_181089 11495012 99 - 12369635 UGCC-UUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUACAGCAGCCGCCUCGGCACACGCAAAACUCAUUG ((..-(((---(.(((((.(((.....(((((.((((((....)))))).)))))...(((((.....)))))..........)))))))).))))..))... ( -27.10, z-score = -2.11, R) >droVir3.scaffold_12855 6098358 100 + 10161210 UGCCUUCUGGCUCGGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA---CACUCGCAUCGGCACACGCAAAACUCAUUG .(((....)))...((((((((.....(((((.((((((....)))))).))))).....((((......---.....)))).)))).))))........... ( -28.00, z-score = -2.17, R) >droMoj3.scaffold_6540 25763210 85 + 34148556 ---------------UGUUGCCAUUAAGUGCAAAAGGAUUUUCAUCCUUAUGCGCAUCCUGUGCAUAAUA---CACUCGCAUCGGCACACGCAAAACUCAUUG ---------------.((((((.....(((((.((((((....)))))).))))).....((((......---.....)))).)))).))............. ( -22.70, z-score = -2.59, R) >droGri2.scaffold_14906 7489559 97 + 14172833 UGCCAUUU---UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA---CAGUCGCAUUGGCACACGCAAAACUCAUUG .....(((---(.(((((.((((....(((((.((((((....)))))).)))))...(((((.....))---)))......))))))))).))))....... ( -27.40, z-score = -2.53, R) >consensus UGCCUUUU___UCCGUGUUGCCAUUAAGUGCAAAAGGAUUUUCAUUCUUAUGCGCAUCCUGUGCAUAAUA___CAGCAGCAUCGGCACACGCAAAACUCAUUG ..............((.((((......(((((.((((((....)))))).)))))....(((((....................))))).)))).))...... (-20.00 = -20.00 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:36 2011