| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,727,531 – 8,727,630 |
| Length | 99 |
| Max. P | 0.979907 |
| Location | 8,727,531 – 8,727,630 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.33 |
| Shannon entropy | 0.46948 |
| G+C content | 0.38775 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -14.78 |
| Energy contribution | -14.44 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8727531 99 + 27905053 ----UUGCCGGCUCUUGC--C---AAAAACGGAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUAGCCAG-------GGAUGCCGAGGAAAA ----((.(((((((((.(--(---((...(((((.(((((((((((....))))))))))).))))).....)))).....((.....))..)-------))).)))).).)).. ( -26.00, z-score = -1.16, R) >droSim1.chr3R 14828442 99 - 27517382 ----UUGCCGGCUCUUGC--C---AAAAACGGAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUAGCCAG-------GGAUGCCGAGGAAAA ----((.(((((((((.(--(---((...(((((.(((((((((((....))))))))))).))))).....)))).....((.....))..)-------))).)))).).)).. ( -26.00, z-score = -1.16, R) >droSec1.super_0 7858662 99 - 21120651 ----UUGCCGGCUCUUGC--C---AAAAACGGAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUAGCCAG-------GGAUGCCGAGGAAAA ----((.(((((((((.(--(---((...(((((.(((((((((((....))))))))))).))))).....)))).....((.....))..)-------))).)))).).)).. ( -26.00, z-score = -1.16, R) >droYak2.chr3R 13023591 99 + 28832112 ----UUGCCGGCUCUUGC--C---AAAAACGGAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUAGCCAG-------GGAUGCCGAGGAAAA ----((.(((((((((.(--(---((...(((((.(((((((((((....))))))))))).))))).....)))).....((.....))..)-------))).)))).).)).. ( -26.00, z-score = -1.16, R) >droEre2.scaffold_4770 4827834 106 - 17746568 ----UUGCCGGCUCUAGC--C---AAAAACGGAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUAGCCCGAUGCCCGGGAUGCCGAGGAAAA ----((.(((((.....(--(---((...(((((.(((((((((((....))))))))))).))))).....)))).............((((.....))))..)))).).)).. ( -29.50, z-score = -1.43, R) >droAna3.scaffold_13340 14258648 98 - 23697760 ----UUGCUGACUCUUGCAGC---CAAAACGAAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUAGAGCU----------UGCCGACGAAAA ----..((...((((((((.(---(((..(((((.(((((((((((....))))))))))).))))).....))))....))))...))))..----------.))......... ( -24.70, z-score = -2.56, R) >dp4.chr2 19337332 100 - 30794189 -UUGCUGACUGCUUAGGCAGC-AGCCAAACGGAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUUCCCACCGACAGAAA------------- -..((((.((((....)))))-)))....(((((.(((((((((((....))))))))))).))))).......(((..........)))............------------- ( -26.80, z-score = -2.58, R) >droPer1.super_0 9062004 100 + 11822988 -UUGCUGACUGCUUAGGCAGC-AGCCAAACGGAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUUCCCACCGACAGAAA------------- -..((((.((((....)))))-)))....(((((.(((((((((((....))))))))))).))))).......(((..........)))............------------- ( -26.80, z-score = -2.58, R) >droWil1.scaffold_181089 11459337 97 + 12369635 UCUGCUGACUGCUUAGACAACCGGGCAAACGGAUCAAAAGUUAAAUUCAUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUGCCCAACAAA------------------ ..((((((....)))).))...((((((((((((.(((((((((((....))))))))))).)))))((((......))))...)))))))......------------------ ( -24.80, z-score = -2.56, R) >droMoj3.scaffold_6540 25722932 90 - 34148556 -CUGUUGACUGCUUAGGCAGC----CAAACGGAUCAAAAGUUAAACUCGUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGAAUUCGGGCAGAA-------------------- -((((...((((....))))(----(...(((((.(((((((((((....))))))))))).))))).......((((.....))))))))))..-------------------- ( -26.30, z-score = -2.68, R) >droVir3.scaffold_12855 6060167 90 - 10161210 -CUGUUGACUGCUUAGGCAGC----CAAACGGAUCAAAAGUUAAACUCAUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUGGGCAAAA-------------------- -...(((.((((....)))).----))).(((((.(((((((((((....))))))))))).)))))..........((((((......))))))-------------------- ( -26.80, z-score = -3.29, R) >droGri2.scaffold_14906 7458515 90 - 14172833 -CUGUUGGCUGCUUAGGCAGC----CAAACGGAUCAAAAGUUAAGCUCAUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUGGGCAAAA-------------------- -...((((((((....)))))----))).(((((.(((((((((((....))))))))))).)))))..........((((((......))))))-------------------- ( -33.90, z-score = -4.76, R) >consensus ____UUGCCGGCUCAGGCAGC___AAAAACGGAUCAAAAGUUAAAUUCCUGUUUGACUUUUCAUUCGAAAAAUUGGAUUUUGCAUUUAGCCAG______________________ .............................(((((.(((((((((((....))))))))))).)))))................................................ (-14.78 = -14.44 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:31 2011