| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,725,889 – 8,725,939 |
| Length | 50 |
| Max. P | 0.792181 |
| Location | 8,725,889 – 8,725,939 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 96.00 |
| Shannon entropy | 0.05510 |
| G+C content | 0.61333 |
| Mean single sequence MFE | -16.33 |
| Consensus MFE | -15.87 |
| Energy contribution | -16.20 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8725889 50 - 27905053 GCAGAUUUCCUUGCCGGGCACUUGGCAGCUUUCCGUUCGCCUCUGUGCCA ((((......))))..(((((..((((((.....))).)))...))))). ( -17.70, z-score = -1.80, R) >droEre2.scaffold_4770 4826277 50 + 17746568 GCAGAUUUCCUUGCCCGGCACUUGGCAGCUUUCCGUUCGCCUCUGCGCCA ((((......))))..(((.(..((((((.....))).)))...).))). ( -14.10, z-score = -0.77, R) >droSim1.chr3R 14826832 50 + 27517382 GCAGAUUUCCUUGCCGGGCACUUGGCAGCCUUCCGUUCGCCUCUGUGCCA ((((......))))..(((((..((((((.....))).)))...))))). ( -17.20, z-score = -1.49, R) >consensus GCAGAUUUCCUUGCCGGGCACUUGGCAGCUUUCCGUUCGCCUCUGUGCCA ((((......))))..(((((..((((((.....))).)))...))))). (-15.87 = -16.20 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:30 2011